Gene detail

Gene detail information of Glyur000790s00021796

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57490.1	4.00E-115	Ribosomal protein S5 family protein
NR	XP_003525227.1	3.83E-163	PREDICTED: 40S ribosomal protein S2-4-like [Glycine max]
COG	YP_001013495.1	2.00E-58	30S ribosomal protein S5P [Hyperthermus butylicus DSM 5456]
Swissprot	tr\|Q9SCM3\|RS24_ARATH	1.00E-146	40S ribosomal protein S2-4
trEMBL	tr\|I1K5K3\|I1K5K3_SOYBN	1.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G34570.1}

Sequence

Transcript Sequence

>Glyur000790s00021796.1
ACAAAACACAAAATCTCATCCACACCCACTTCAGCTGTGTCCTCTTTCTCTCTCTGCGCGCCTTTTAGGGTTTCATTTCTTCTCTCTGTATCCAACAAACAATGGCAGAGCGCGGAGGCGGTGACCGTGGCGGGTTCGGGCGTGGTTTCGGAGGCCGCGGACGCGGCGGCGACAGGGGCCGCGGCGGTCGTCGTAGAGGCGCTCGCCGCGAAGAGGAAGAAAAGTGGGTCCCAGTAACAAAACTCGGACGTNTAGTGAAGGAAGGTAGAATCCGTAGCGTGGAGCAGATCTACCTGCACTCTCTCCCCATCAAGGAGCACCAGATCGTAGACACACTTGTGGGTCCCACACTGAAGGACGAGGTCATGAAGATCATGCCGGTCCAGAAACAAACCCGAGCCGGACAACGAACCCGGTTCAAGGCATTCGTTGTCGTTGGAGACGGAAACGGCCACGTGGGACTCGGCGTNAAGTGCAGCAAGGAAGTTGCAACCGCGATTCGCGGGGCAATCATACTNGCGAAGCTTTCCGTTATTCCCGTTAGGAGAGGTTATTGGGGTAACAAGATCGGGAAGCCTCACACCGTTCCCTGCAAGGTAACGGGGAAGTGTGGCTCCGTTACCGTTAGGATGGTTCCNGCTCCTCGTGGTTCTGGAATTGTTGCAGCTAGGGTTCCTAAGAAGGTGTTGCAGTTCGCTGGGATTGATGATGTCTTCACTTCCTCCAGAGGATCCACTAAGACTCTCGGCAATTTCGTTAAGGCTACATTTGAGTGTTTGCTGAAAACCTACGGTTTCCTGACACCTGATTTCTGGAGGGAGACTCGCTTCACGAAATCTCCATTCCAAGAGTTCACAGATCTATTGGCGAAGCCTACAGGAAAGGCCATAATCTTGGAGGAGGAAAGGGTGGATGCTTGAGTTTACCAGTTTTGGTTTTATTGGATACAATTTATTTATCTTAAGCATGTTAGGAAACTAGTTCTTGCATACTTTGTTGCTTCTGCTGTGTACTTTTCTTTTGGGTCTTTTATATGTCTTTTGTTTTAAGTTATGTTTTAATTGAATGGATATTTGTTGAATTTCAAGTGACATAGCTTTCCTCCTGTTTTATTTGGCTATTGCAACTGAATGGCAGAATTCAGAGACAGGGGAGCAGGTGTGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00790	20829	22753	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005840 ribosome

GO:0015935 small ribosomal subunit

molecular_function

GO:0003723 RNA binding

GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000790s00021796.1	PF00333.15	Ribosomal_S5	84	149	2.50E-29
Glyur000790s00021796.1	PF03719.10	Ribosomal_S5_C	166	232	5.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	82.961
SRR1783600	control	83.397
SRR1783602	moderate drought stress	89.958
SRR1811619	moderate drought stress	88.174

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	154.597
DRR006520	Root Summer glycyrrhizin high producing strain	153.284
DRR006521	Root Winter glycyrrhizin high producing strain	148.323
DRR006522	Root Winter glycyrrhizin high producing strain	144.102
DRR006523	Root Summer glycyrrhizin low producing strain	135.120
DRR006524	Root Summer glycyrrhizin low producing strain	134.247
DRR006525	Leaf Summer glycyrrhizin high producing strain	72.201
DRR006526	Leaf Summer glycyrrhizin high producing strain	71.871

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	318.187
SRR2868004	Drought Stress (root)	193.273
SRR2967015	Control (root)	210.407

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	167.250
SRR9715740	Leaf	171.167
SRR9715741	Leaf	144.699
SRR9715739	Root	506.269
SRR9715742	Root	247.566
SRR9715743	Root	280.777

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	252.166
SRR8749028	MeJA induced 9h	102.086
SRR8749029	MeJA induced 9h	142.520
SRR8749030	Uninduced	32.577
SRR8749031	Uninduced	11.270
SRR8749032	Uninduced	51.581

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	227.422
SRR8400027	Control - Root	210.676