Gene detail

Gene detail information of Glyur000786s00023866.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G25054.1	1.00E-109	UDP-3-O-acyl N-acetylglycosamine deacetylase family protein
NR	XP_004498250.1	0	PREDICTED: probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2-like [Cicer arietinum]
COG	YP_007168859.1	1.00E-76	UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase [Halothece sp. PCC 7418]
Swissprot	tr\|Q9FE36\|LPXC1_ARATH	1.00E-141	Probable UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 1 (Precursor)
trEMBL	tr\|I1JDH4\|I1JDH4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G09350.1}

Sequence

Transcript Sequence

>Glyur000786s00023866.1
CATGAGTTTGGCATGTTTGGGTCACGAGAGCAGTGTGATTCACTGATTGGGAACCCAGGCCGCGTAGGGTTTAAGGGTCTGATTCGTACTACTAGCCACTGAGATTGGATTGTTTGGTTTCCTTGGTTATTTGGTTGGGGAAACTCGGACAGTTTGCTAGCTGAATTAGCCGCCATTTTTCAAGGACTTATCCTTGGACCAGCTGCTGCAGATTCTGGAGTCGCCGCAGCCGCCATGCCTCGGGAGCTTTCTCTTGGCTGATAGAATGAGGTTTTTCTTCCCTCTGGAGTAGCTGGGCTGTGGTTCTAGTTATTTTCTTGTTGTTTTTCTTCCTTTGTTTAACTTCTTCTACCAACAAAAAAAAAACGCGCGGCTTGTTNCGGTGTTGTCGGGACACGGGATTTTCACACAATGGCTGCCGTCAACGCTCTCAAATCGTCAAAACTTATCTCCTGGAAACCCACTGGAAGGCTCCAGCAAACCCTAGCGGGATGCGTGGAGCGGAGCGGAAAGACTTTGCATTCTGGAAAGGTTTCGACGGTGAGACTCTGCCCCGGATTTGCAGGCCAAGGAAGGTACTTCGATTTTCGATCCAATTCGATTCCGGCGTCTGTTGAATTCGTTCAGGTTTCGCCTCTCTGCACCTCCCTGTGTAGAGACGGTTTCCGGATTCGAACCGTGGAGCACTTGCTTTCTGCTTTGGAGGCTGCTGGTGTTGATAATTGCAGGATTGAGATAGAGAATTCGGATGCTCAAGGCAATGACAACGATGCCGAGGTTCCTATATTTGATGGGTCATCAAGGGAATGGGTGGCAGCCTTGGATGAAGTTGGTTTAAAGGTAGCAACTGATATTGGCGGCAAAAGCTGTGAGAAAATAGCGCCGCATGTGAGTGAACCAGTGTATGTTTGGAGGAATGATTCTTTTGTTGCTGCATTTCCTTCAGAAGTGGTTCGAATAACTTATGGCATCAACTTTCCACAGGCACCTGCTATTGGCTGCCAGTGGTTTTCTACAACGCCCTTGGATAATTTGGTTTATTCCACGCAGATAGCTTTGTCAAGAACCTTCTGCATTTATGAGGAGGTTGAGCAAATGCGCAATGCTGGACTCATTAAAGGGGGATCTCTTGAAAATGCCATCGTGTGTAGTGCCAGTAAAGGTTGGTTGAATCCACCTCTGCATTTCAGTGATGAACCATGTCGTCACAAGATCTTAGATCTCATTGGTGATCTCTCGCTGTCTGCTCAGTTTGGTAATCAAGGACTCCCAGTGGCACACATTGTAGCTTACAAGGCANGTGGTGGCCATGCATTGCATGCTGATTTGGCATGCCGCCTGACGGGGATGATGTGAAAAGCTGGCAGNCATGTTGCCACTGATAAACCAAGAAGCTATTGCAGTTTTTGGTGAATTTGTTGCTGAAATTCAATGATTTTGAGCTTCTGGGCAGCCAAGGTGGCTGCGAAGAGATGCTGAAATGCATAAACGTCTGATATCATAATTCCGTTTCTCAACATTGTTGCTTTCTTGGAACCAGCAAGACCAAGATAGTCAAAATTGAGATTCTACTCAGAAACGGGGAGGGGGAACAGAATCGTAATTCGTAGAATCTGGTCCTAAATTGCATCAAAGCTGTCCCCTTCAACGGCCATGAAGTGCATCGAAGCTTTCTCGATGTGAAGAAGCCCTAACTTTCATGGGGAAGAAGCTCCCACAACAGCGCGATGAACAAGTGACCGAAGACAGGTCTCATGCTATGTGTGACTGTAGTGGAAGATGGTATGAGTTAGTGAATGGAAAGCAATCTCTGTCAGAAGCAAGATTAATGATGGCGTTATGAATGAGGTGTCTTACTTCGAATTGAAACAAGTGTGTCCTAATTTGTGGTGGTTTCTTGGCACTCAAAACCACATTCAGATTTAGGAGTAAGTGTTGCATATTTCATTTGATTCTGCTTTCAATTTGCAAAAGTGAAATTCATTCTGCCTTGCAAAAGAGAACATCCAGACTCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00786	106810	113277	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CE11

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02535	lpxC	EC:3.5.1.108	Lipopolysaccharide biosynthesis	map00540

Gene Ontology

biological_process
GO:0009245 lipid A biosynthetic process

molecular_function
GO:0008759 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000786s00023866.1	PF03331.8	LpxC	22	309	4.10E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.125
SRR1783600	control	4.190
SRR1783602	moderate drought stress	4.739
SRR1811619	moderate drought stress	4.748

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.190
DRR006520	Root Summer glycyrrhizin high producing strain	5.353
DRR006521	Root Winter glycyrrhizin high producing strain	4.061
DRR006522	Root Winter glycyrrhizin high producing strain	4.002
DRR006523	Root Summer glycyrrhizin low producing strain	4.351
DRR006524	Root Summer glycyrrhizin low producing strain	4.069
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.752
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.960

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.116
SRR2868004	Drought Stress (root)	6.289
SRR2967015	Control (root)	6.488

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.710
SRR9715740	Leaf	8.882
SRR9715741	Leaf	9.512
SRR9715739	Root	4.259
SRR9715742	Root	7.196
SRR9715743	Root	5.835

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.583
SRR8749028	MeJA induced 9h	13.835
SRR8749029	MeJA induced 9h	15.078
SRR8749030	Uninduced	25.194
SRR8749031	Uninduced	16.176
SRR8749032	Uninduced	15.665

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.265
SRR8400027	Control - Root	8.152