Gene detail

Gene detail information of Glyur000786s00023862

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01680.1	0	Ankyrin repeat family protein
NR	XP_003637659.1	0	Ankyrin repeat-containing protein [Medicago truncatula]
COG	YP_006705407.1	7.00E-20	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprot	tr\|Q9ZU96\|Y2168_ARATH	0	Ankyrin repeat-containing protein At2g01680
trEMBL	tr\|G8A009\|G8A009_MEDTR	0	Ankyrin repeat-containing protein {ECO:0000313\|EMBL:AES84797.1}

Sequence

Transcript Sequence

>Glyur000786s00023862.1
AAGGAAACGCTTGTTCAATTGAAAAACCGCCATTTTTGTCCTTAACTCCACATCTTTTTCCACTTAGATTCTTACTCACATGTGCTTCTCTATACCTCTTCCTGGATTGTAATAGAAACACAGAAAAGAAAAGTTTGTTGGTGTGAAAGAATATAAAGAAAGAGACTTCAATTGCAAACAAATCAACACAAGATCAAAGGTCTTGTCTTCTATGTGTGTGTGTTGTGTCGCATGACATGATGGACTCAAAGGCTCTTTGCTTCATAACCCACCAAGCAATTTTCAATGCTGTTCGATGTGGGGACCTTGAAGGGCTGAAGCAGCTACTGAAACAGCTGAACAAGGGTGAATCCTCAGATGGGTTATCATCATCATCATCATCAAATTCACCACTTTCTGAACTCATGTCCATGCAGAATGATGCTGGAGAGACCTTGNTGTACATAGCTGCAGGGCATGGTCTTAAGGAGGTGTTCAGCTTCTTGCTCCGCTTCTGTGACTTGGAGGTTGTGAAGATCAGGTCTAAATATGATATGAACGCCTTTCATGTTGCAGCCAAGCGTGGCCATTTGGAAATTGTGAGGGAGATTTTGAGTACTTGGCCAGAGGTTTGTAAGATATGCGACTCCTCGAACACTAGCCCCCTTTATTCAGCAGCTGTTCAAGACCATTTGGATGTGGTGAATGCTATCTTGGATGTTGATGTGAGTTCAATGATGATAGTAAGGAAAAACGGCAAAACTGCATTGCATAATGCTGCTAGGTATGGCATCCTTAGCATTGTAAAAACACTTATTGCCAGAGATCCAGCAATAGTCTGCATCAAAGATAAAAAAGGTCAAACTGCACTGCATATGGCTGTGAAAGGACAGAGTACTTCAGTGGTGGAGGAGATATTGCAAGCTGATCCTATTATATTGAATGAAAGAGATAAGAAGGGTAATACAGCTCTTCACATGGCTACTAGGAAAGGCCGTTCACAGATAGTGAGCTTTTTGCTGCGCTTTACAGCTATGAATGTCAATGCCATCAGTAATCAGCAAGAAACAGCTTTGGATTTGGCAGATAAACTTCCATATGGAGATTCNGCTTTGGAAATAAAGGAAGCCCTTGCAGAATGCGGTGCCAAGCATGCCAGACATGTTGGCAAAATGGATGAAGCCAAGGAACTAAAAAGAGCAGTGAGTGACATAAAGCATGAGGTGCAGTCACAGCTCATACAGAATGAAAAAACCCGCAGGCGAGTCTCCGGTATAGCTAAGGAGTTGAGGAAAATCCATAGGGAGGCAGTTCAAAACACGATCAATTCCGTCACGGTAGTTGCGGTCCTTTTCGCGTCAATAGCATTCATGGCATTGTTCAGTTTGCCTGGTCAATATAGAAAGAAACAGCCAGAGGCAGGGAAGGCAAATATAGAAGATGATGTTGCCTTCAGTGTTTTCTGCCTTTTGAATGCGACATCCCTTTTCATTTCTCTTGCAGTTGTGGTTGTTCAGATCACTTTGGTAGCATGGGACACAAGGGCTCAAAAGCAGGTTGTGTCAGTGGTTAACAAGCTNATGTGGACTGCTTGTGCCTGCACTTGTGGGGCTTTTCTTGCAATAGCTTTTGTGGTTGTTGGAAAGGAAACATGGATGGCTACTACTGTTACCCTTTTGGGTGCACCAATTCTAGTTGGGACTCTAGCATACTTGTGCTATTTTGTTTTTAGGAGACATTTTGGTGATTCCCAGAGATTGGTTAAGAGAGCAAGTGGAAGCAAGTCATTCTCATGGTCTTACTCTGCAAATATATCAGATGTGGATGAATATGATTCTGGTCTTGAGAAGATCTATGCTCTGTGAGACAAGTATGATTATGATACCATTTCAACATCACTGTTTCAACCTTTTAACTTGAGCAGATATCATGCCACTTTCAGAAAGAAAGGGAAACCTAGGAATGTCACAAAATTCTATCTCTCTTCTAGATAAATGAATCTGTGAATAACTGAATATCCATGAAGTGAGAGATAGACACAAAATTCTCACTGTGACAAGGTCTATATATAAAAGTTTTAACATGAGTGTATATATGTTCCCTAGCTCAATAGGATTCAGCTGCTTAATTTGCAGTTTCCTTGTAAACTCATTTTACTTTGTGATATACTTTTGGGTTTTGGAAATACATATCTATGTGGTTATTGGGATGAGCTCAATATGCAAGTGTGTGAAGTTATTGTGTAGGGTTCAATGGACCTAAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00786	81372	85096	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000786s00023862.1	PF12796.2	Ank_2	70	155	2.30E-07
Glyur000786s00023862.1	PF12796.2	Ank_2	171	257	1.40E-15
Glyur000786s00023862.1	PF13962.1	PGG	350	459	5.80E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.880
SRR1783600	control	11.912
SRR1783602	moderate drought stress	11.160
SRR1811619	moderate drought stress	10.991

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.747
DRR006520	Root Summer glycyrrhizin high producing strain	17.531
DRR006521	Root Winter glycyrrhizin high producing strain	17.087
DRR006522	Root Winter glycyrrhizin high producing strain	16.872
DRR006523	Root Summer glycyrrhizin low producing strain	15.387
DRR006524	Root Summer glycyrrhizin low producing strain	15.307
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.470
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.429

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.390
SRR2868004	Drought Stress (root)	10.767
SRR2967015	Control (root)	12.552

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.367
SRR9715740	Leaf	2.841
SRR9715741	Leaf	2.682
SRR9715739	Root	1.500
SRR9715742	Root	10.299
SRR9715743	Root	8.741

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.143
SRR8749028	MeJA induced 9h	0.554
SRR8749029	MeJA induced 9h	0.423
SRR8749030	Uninduced	0.275
SRR8749031	Uninduced	0.156
SRR8749032	Uninduced	0.076

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.359
SRR8400027	Control - Root	16.416