Gene detail

Gene detail information of Glyur000786s00023859

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01670.1	2.00E-65	nudix hydrolase homolog 17
NR	XP_004498257.1	1.17E-104	PREDICTED: nudix hydrolase 17, mitochondrial-like [Cicer arietinum]
COG	YP_001412181.1	2.00E-16	NUDIX hydrolase [Parvibaculum lavamentivorans DS-1]
Swissprot	tr\|Q9ZU95\|NUD17_ARATH	4.00E-82	Nudix hydrolase 17, mitochondrial (Precursor)
trEMBL	tr\|G8A033\|G8A033_MEDTR	5.00E-104	Uncharacterized protein {ECO:0000313\|EMBL:AFK47343.1}

Sequence

Transcript Sequence

>Glyur000786s00023859.1
ACTTTATCTATCTATTATTTTGTTCTATCTATTCGTCTCTTTTTCCTGTCTCGTCTCTTCTCTTCGTGGGTCGTTTGAGATTTCTTCGGATTTCATCTCTTTGAAAGCGAAAGGGTACTAATTTTGAGAGTGGTAATTGAGAGAGATGGTGGTTTGCTTGGTATCTCGCTCTGGAAGGCAGTTGCAGAGGTACAACAGTACGGGTGGTCGCCAAGTTGTGGGGTGCATACCTTACAGATATAAACAAGACTGTGATGGTAATATGAGCAATGAATTGGAGGTACTNGTGGTTAGTTCACAAAAAGGTCAAGCATTGATGTTTCCCAAGGGTGGATGGGAACTTGATGAATCTGTAGAAGAAGCAGCTTGCAGGGAATCCCTTGAAGAAGCAGGAGTTATAGGAATCGTTGAGCATGAATTGGGTCAATGGAGCTTCATTAGCAAAAGACATGGTACATACTATGAAGGACACATGTTTCCTTTACTTGTCAAGCAACAACTTGACCTCTGGCCTGAGAAAAATCTAAGGAGAAGATTATGGATGAATGTTGTTGAAGCCCGAGAAGTTTGTCAGCATTGGTGGATGAAGGAAGCATTGGATATACTTGTTGATCGACTAACTGATCAACAGCAAAATAGGAACATTTAGCATTAATTATTGGCTACAATTAAGTTTAGGAAATTGTCCAATATTGTTTCGCATCTTTAAAGTTTAATTAAGCAAATTAAAAGATTACAGAGCATAAAGCCTGAGAAGATTGATGGATGAAGGCCTGAAGGAAGCATCAAGCATATATATGAGACATTTTTTTTTTTGGTCAATAATATATGAGACATTTTAAGCGGCTCATTTTTGCACAGCAAAAAATAGGAACACGTTGATAGCATCATTGGCTGCAAGTTCATTCAGTCAAATAGGAAAGCGTCAATGTTTCACATCTCCAAAATTTGACTAGGCAAAAAATTATAGAGCATTTATGCAATTTAAGCTATATATCTCCTAGTTGAAGTTAAAAAGGAGGTCATGTACAAGTNCCTTGTATTTATCTGATAAAAAACAAAATTCATTGTACTTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00786	61093	63343	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016787 hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000786s00023859.1	PF00293.23	NUDIX	23	148	5.00E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.583
SRR1783600	control	0.579
SRR1783602	moderate drought stress	0.343
SRR1811619	moderate drought stress	0.282

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.742
DRR006520	Root Summer glycyrrhizin high producing strain	48.347
DRR006521	Root Winter glycyrrhizin high producing strain	0.102
DRR006522	Root Winter glycyrrhizin high producing strain	0.100
DRR006523	Root Summer glycyrrhizin low producing strain	87.483
DRR006524	Root Summer glycyrrhizin low producing strain	86.217
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.464
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.288

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.119
SRR2868004	Drought Stress (root)	17.971
SRR2967015	Control (root)	51.563

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	60.977
SRR9715740	Leaf	17.754
SRR9715741	Leaf	60.305
SRR9715739	Root	22.019
SRR9715742	Root	100.426
SRR9715743	Root	87.282

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	94.234
SRR8749028	MeJA induced 9h	135.966
SRR8749029	MeJA induced 9h	128.775
SRR8749030	Uninduced	158.429
SRR8749031	Uninduced	58.565
SRR8749032	Uninduced	48.927

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.404
SRR8400027	Control - Root	38.120