Gene detail information of Glyur000786s00023857 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06620.1 | 3.00E-37 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_003637672.1 | 4.01E-96 | Gibberellin 20 oxidase [Medicago truncatula] |
| Swissprot | tr|Q84MB3|ACCH1_ARATH | 7.00E-43 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1 |
| trEMBL | tr|G8A022|G8A022_MEDTR | 1.00E-96 | Gibberellin 20 oxidase {ECO:0000313|EMBL:AES84810.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00786 | 49186 | 52520 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000786s00023857.1 | PF14226.1 | DIOX_N | 67 | 163 | 8.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.604 |
| SRR1783600 | control | 4.583 |
| SRR1783602 | moderate drought stress | 6.407 |
| SRR1811619 | moderate drought stress | 6.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.466 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.439 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.638 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.938 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 18.857 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.483 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.914 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.650 |
| SRR2868004 | Drought Stress (root) | 21.417 |
| SRR2967015 | Control (root) | 22.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 46.366 |
| SRR9715740 | Leaf | 49.983 |
| SRR9715741 | Leaf | 72.791 |
| SRR9715739 | Root | 11.302 |
| SRR9715742 | Root | 15.717 |
| SRR9715743 | Root | 15.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.145 |
| SRR8749028 | MeJA induced 9h | 10.005 |
| SRR8749029 | MeJA induced 9h | 7.218 |
| SRR8749030 | Uninduced | 10.829 |
| SRR8749031 | Uninduced | 5.050 |
| SRR8749032 | Uninduced | 7.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.623 |
| SRR8400027 | Control - Root | 16.418 |