Gene detail

Gene detail information of Glyur000786s00023854.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G70670.1	3.00E-59	Caleosin-related family protein
NR	XP_003533958.1	3.67E-97	PREDICTED: probable peroxygenase 4 [Glycine max]
COG	YP_008154989.1	7.00E-34	hypothetical protein SCE1572_43185 [Sorangium cellulosum So0157-2]
Swissprot	tr\|Q9CAB7\|PXG4_ARATH	5.00E-72	Probable peroxygenase 4
trEMBL	tr\|G8A026\|G8A026_MEDTR	7.00E-97	Uncharacterized protein {ECO:0000313\|EMBL:AFK34716.1}

Sequence

Transcript Sequence

>Glyur000786s00023854.1
AAGAAGGAATCAAACCGGAGATTTGGGAAACTTTTTATATATAACTGATATATTTCACACCCGGAATCTGCCAGAGCAGTTCTCACTGTGTCATAGCCACCATAATCACAAGTCACAACAAGTTCTCTTTTCCCTCTTCATTTGCCTCCATATATTCCTTTGCGTTCAATTCTGTGGTGCTGTTTGTTTTGTTGCCTCTTTCTGTATTTCTATCTCTCTACCCATCAAATACCCATGGCTAGCACTATGACTGCAGAAGACAGAAACAACCAAGAGGGATCAGTTGGTGAGAAAGCACATGATGAAAACGTTCTGCAAAAACACGTTGCATTCTTCGACCGGAACCATGACGGCATCATTTACCCATGGGAAACTTTCCAAGGATTCCGTGCAATGGGTTGTGGAATAGTGTTATCGGTTTTTAGTGCTATTTTCATTAATTTCGGTCTCAGCCAGAAAACTCGCCCGGGCAAGTTTCCTTCCATATTTCTACCAATAGAAGTTAAAAACATCCAAAGAGGCAAACATGGAAGTGACTCTGGTGTCTATGATAGCGAAGGAAGGTTTGTTCCTTCAAAATTTGAAGAAATTTTCAGCAAGCATGCCCAAAAACACCCAAATGCTTTAACATCTGACGAATTGATGGGGATGCTAAAGGCAAATAGAGTTCCTAAGGATTACAAAGGATGGCTTGCTAGCTACACAGAGTGGAAGATATTATATGCCCTTTGCAAAGACAAGGATGGAGTAGTTGGAAGTATTGAGGAGAAACCCATTCCAGTACTTCATGAAAACGTTCTGCAGAAGCATACTGCCTTCTTTGACTTGAATCAAGATGGTGTTATTTACCCATGGGAGACTTTCAAAGGCTTACGTGAAATCGGGAGTGGAATCTTGTTATCCACTGGACTTACTCTGTTCATCAACTTGGGTCTCAGCCAGAGTACTCGCCCTGGAAAATTCCCATCTCTACTTTTCCCAATTGAAGTTAAGAATATCAAACTTGCCAAACACGGCAGTGACACCGGAGTTTATGATACTGAAGGAAGGTTTGTTGCTTCAAAATTTGAAGAAATTTTCATCAAACATGCACATACACATCCAAATGCTTTAACATATGATGAGCTGAAGGAGATGCTAGAGGCCAACAAAGAGCCTAAAGATCTCAAAGGAAGGATTGGTAGCTCGGTTGAATGGAAAGTTCTTTACAAACTTGCCAAAGACAAGAATGGTTTACTACAGAAAGAAACAATCCGAGACCATTTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00786	19914	32312	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K17991	PXG	EC:1.11.2.3	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000786s00023854.1	PF05042.8	Caleosin	21	173	7.40E-72
Glyur000786s00023854.1	PF05042.8	Caleosin	186	344	1.00E-70

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.024
SRR1783600	control	4.064
SRR1783602	moderate drought stress	5.733
SRR1811619	moderate drought stress	5.565

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.127
DRR006520	Root Summer glycyrrhizin high producing strain	14.908
DRR006521	Root Winter glycyrrhizin high producing strain	85.172
DRR006522	Root Winter glycyrrhizin high producing strain	80.376
DRR006523	Root Summer glycyrrhizin low producing strain	26.850
DRR006524	Root Summer glycyrrhizin low producing strain	27.415
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.620
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.511

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.917
SRR2868004	Drought Stress (root)	48.168
SRR2967015	Control (root)	46.080

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.559
SRR9715740	Leaf	8.035
SRR9715741	Leaf	13.716
SRR9715739	Root	1.633
SRR9715742	Root	12.378
SRR9715743	Root	12.192

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.759
SRR8749028	MeJA induced 9h	33.304
SRR8749029	MeJA induced 9h	37.954
SRR8749030	Uninduced	65.820
SRR8749031	Uninduced	25.896
SRR8749032	Uninduced	24.421

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.443
SRR8400027	Control - Root	38.254