Gene detail

Gene detail information of Glyur000786s00023852.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G46330.1	1.00E-130	Leucine-rich receptor-like protein kinase family protein
NR	XP_009619421.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Nicotiana tomentosiformis]
COG	YP_004775215.1	4.00E-50	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	6.00E-146	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|K4BE26\|K4BE26_SOLLC	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:Solyc03g006030.2.1}

Sequence

Transcript Sequence

>Glyur000786s00023852.1
ATGGAGAAAACTTGCTTCATTTTCACTTTTGTCATGTTATTCCACCAATATTTCATGGCCTCCATAGACANAAGCAACACCAACTCCACTATAGACCAATCTGCTCTCATGGCCTTTAAATCTTATATCACTTTTGATCCTCAAAACAATGTCTTGGCCAATAATTGGTCTACTTCTTCCCCTGTGTGCAATTGGTTAGGGGTCACTTGTGATCCCAATAATGGAAGGGTCACAAATTTGACTCTCACAAACATGAATTTAAAGGGTAACCTTCCACCCCACTTAGGAAACTTGTCTTTCCTTGTTGATCTCGATCTTAACAACAATAGTTTTCATGGAATTCTACCAAAAGACTTGACCTTGTTACCTAGATTGAAGGTTGTCAACCTGTGCACAAACAAATTTGGTGGAGAGTTTCCAACTTGGATGGGGGAGTTATCTAAACTCCAACATTTGAGTCTTTGTAATAACACCTTTTCGGGTTCCATTCCTTCATCCCTATCCAACTTGTTAGAGCTGGAGACTTTGGATTTGAGCTTTAATGTCTTGGATGGGAGCATTCCACATGAGCTTGGAAGGCTTCAAAACTTGACGGTTTTGGCTTTGGCACACAATCAGTTATTTGGTGAAATCCCTTCTTCAATCTTCAATATTTCCNCATTGCAAGTGATTGATTTTGAGCACAATTCATTATCNGCAACACCAACTCCACATATAGACCAATCTGCTCTCATGGCCTTTAAATCTTATATCACTTTTGATCCTCAAAACAATGTCTTGGCCAATAATTGGTCTACTTCTTCCCCTGTGTGCAATTGGTTAGGGGTCACTTGTGATCCCAATAATGGAAGGGTCACAAATTTGACTCTCACAAACATGAATTTAAAGGGTAACCTTCCACCCCACTTAGGAAACTTGTCTTTCCTTGTTGATCTCGATCTTAACAACAATAGTTTTCATGGAATTCTACCAAAAGACTTGACCTTGTTACCTAGATTGAAGGTTGTCAACCTGTGCACAAACAAATTTGGTGGAGAGTTTCCAACTTGGATGGGGGAGTTATCTAAACTCCAACATTTGAGTCTTTGTAATAACACCTTTTCGGGTTCCATTCCTTCATCCCTATCCAACTTGTTAGAGCTGGAGACTTTGGATTTGAGCTTTAATGTCTTGGATGGGAGCATTCCACATGAGCTTGGAAGGCTTCAAAACTTGACGGTTTTGGCTTTGGCACACAATCAGTTATTTGGTGAAATCCCTTCTTCAAATCTTCAAATATTTCCGCATTGCAACATCCCTCAACAGGTTGGTAATCTACCACAACTAAGAAGTATAAATTTGAGCAAAATAACCTTTCAGGTTCCATACCATCGTCCTTGTTCAATTTGTCTACGCTTCAAGAGATTCAATTCATTTACAATAACCTATCTGGCTCTTTGCCATTGGATATGTGTCATATTGGGCTTCCAATGCTTGAAAAACTTGACTCTCTGGGAATTCATTTTCTGGTCAAATCCCATCAAGCTTGTATCAATACGAATAAATCTTCGGAACAATATCTTTGATGGTCAACTTCCAGAAGAAATGTGTCAGCATGCTCACTCGCTCCAACATTTTTCTATACTAAATAGCAGAGTTGGGGGAATCATACCAAGGTCTATTAGCAATTGCACTTCATTGAGACGCTTGTATTTGGGAGCAAACTTTTTTACAGGTATGATACCATATGAAATTGGTGACTATTTAAAAGACCTTGAGTATTTGCATTTGCAAGGTAATAGACTGAGAGGGTCTATTCCTACAAACATATTCAACATCTCAGGGTTGAAAAGTTTGTCACTATCAAATAACCAACTCTCAGGAAATCTTCCAATTTATGCATATCATAGCCTATCCAACCTCCAATTCTTNTACCTTTCAGCCAATAAACTGAGTGGAGAAATTCCAAGTGGCCTTTTCAATGCTTCAATGCTTCTTGAACTAGTACTTGCCAACAATACTTTCACAGGAGTTATACCAGACTCAATTGGGAATTTAAGAAATCTTCAAATCCTTTATCTGTTAGGAAACAAAAAATTGGAAAAGATTTTGTTATCAACGAATCCTCTTAATGGAACACTTCCAACTTCTATTGGAAACCTGTCAAAGACTCTTCAAACCTTTGATGCTTGGAGTTGTGACATCAAGGGTGAAATTCCTCCACAAATTGGTAGTTTAAAGAACTTGTATGACATAAACCTGAAACAGAACCAACTTATTGGACAGGTTCCTAGTGCAATTGGCACTTTACCACTTCTCCAACGTTTGGACCTTTCAGACAACAAATTAAATGGCACAATCCCAAGTCAGATTTGTCAATTAACAAAAATGAATGAGTTACATCTTAGCAAAAATCAGATTTTTGGGCCAGTACCAAAATGCATGGGGAGTCTTACTTCTCTAAGAAAACTTTACTTGGATTCCAATAATCTGAACTCTACAATACCTTCTTCCCTTTGGAGCCTCACTGATATATTGGAGGTGAACTTATCCTCTAATGTTCTTGATGGTATTATCCCCAAGTCAATTGAGAAACTTGTTTATCTCAAATCTATCAACTTGTCCTATAATGAACTACAAGGAGAANTTCCTTCAGGTGGCAGTTTTGCAAATTTCACAGCTAGTTCATTCATGATGAATGATGCTCTTTGTGGGAGGCCTGAGCTAGAAGTCCAACCATGTCCCATTAATGGTACAAAACATAGCAGAACAGGCAAAAAGCTTGTGCTGAAATTGGTGATACCCATAATTGTGTCTAGCATCTTTGTTGGTTGTGCAATTCTTCTAATATACATGAGAAAATACAACAAAGGTTCAACTAATAATGTAGAATCACCATCATTTCAATTTCCATTTCCAAGTATTTCCTATTATGAACTTGTGAAGGCAACACAGAATTTTGATGAGAGTAATCTTCATGGAAGAGGGAGTTTTGGTTCTGTTTACAGAGGTGAGCTTTCAAATGGAGTGGTGGTTGCAATTAAAGTATTCAATTTGGATGTGCAAGAAGCATCAAGGAGTTTTGACATGGAATGTGAAGCAATGCGCAATCTTCGTCATCGAAATCTAGTTAAAGTCATTACCAGTTGTTCTAATGCTGTTGATTTTAGAGCCCTGGTAATGGAATTTGTGCCAAATGGGAGCCTAGACAAGTGGTTGTATTCTCATAACTACTTCTTACATTTCATACAAAGGTTGAACATATATCTCCATCATGGTAACTCCTCAAAACCTATGGTACACTGTGACTTGAAGCCAAGCAATGTTTTGTTGGACAATAATATGGTAGCTCATGTTTGTGATTTTGGTATTGCTAAACTCTTGGAAGAAGGGCAATCTCAAATGCATACCAACACTTTAGCAACTCTTGGTTATATTGCACCCGAATATGGATCCAAAGGTGTTGTATCCATTAAAGGAGACGTGTACAGCTATGGTATTATGCTCATGGAAGTATTTACAAGAAAGAAGCCAATTGATGAAATGTTTGCAGAGGAATTAAGTTTAAGGTCATGGATCCAAGAGTCAATGCCACACGGGATCATTCAATTAGTTATAGACCCTAATTTGATGGAAGGGGAGGAACAATTTATTTCTGCCAAGGAAGCAGCTTTATCAAATATCATGGTGTTGGCTTTGAGTTGCTCTGCAGATTCCCCTGATGATAGAATGAGTATGAAGGAA

Protein Sequence

>Glyur000786s00023852.1
MEKTCFIFTFVMLFHQYFMASIDXSNTNSTIDQSALMAFKSYITFDPQNNVLANNWSTSSPVCNWLGVTCDPNNGRVTNLTLTNMNLKGNLPPHLGNLSFLVDLDLNNNSFHGILPKDLTLLPRLKVVNLCTNKFGGEFPTWMGELSKLQHLSLCNNTFSGSIPSSLSNLLELETLDLSFNVLDGSIPHELGRLQNLTVLALAHNQLFGEIPSSIFNISXLQVIDFEHNSLSATPTPHIDQSALMAFKSYITFDPQNNVLANNWSTSSPVCNWLGVTCDPNNGRVTNLTLTNMNLKGNLPPHLGNLSFLVDLDLNNNSFHGILPKDLTLLPRLKVVNLCTNKFGGEFPTWMGELSKLQHLSLCNNTFSGSIPSSLSNLLELETLDLSFNVLDGSIPHELGRLQNLTVLALAHNQLFGEIPSSNLQIFPHCNIPQQVGNLPQLRSINLSKITFQVPYHRPCSICLRFKRFNSFTITYLALCHWICVILGFQCLKNLTLWEFIFWSNPIKLVSIRINLRNNIFDGQLPEEMCQHAHSLQHFSILNSRVGGIIPRSISNCTSLRRLYLGANFFTGMIPYEIGDYLKDLEYLHLQGNRLRGSIPTNIFNISGLKSLSLSNNQLSGNLPIYAYHSLSNLQFXYLSANKLSGEIPSGLFNASMLLELVLANNTFTGVIPDSIGNLRNLQILYLLGNKKLEKILLSTNPLNGTLPTSIGNLSKTLQTFDAWSCDIKGEIPPQIGSLKNLYDINLKQNQLIGQVPSAIGTLPLLQRLDLSDNKLNGTIPSQICQLTKMNELHLSKNQIFGPVPKCMGSLTSLRKLYLDSNNLNSTIPSSLWSLTDILEVNLSSNVLDGIIPKSIEKLVYLKSINLSYNELQGEXPSGGSFANFTASSFMMNDALCGRPELEVQPCPINGTKHSRTGKKLVLKLVIPIIVSSIFVGCAILLIYMRKYNKGSTNNVESPSFQFPFPSISYYELVKATQNFDESNLHGRGSFGSVYRGELSNGVVVAIKVFNLDVQEASRSFDMECEAMRNLRHRNLVKVITSCSNAVDFRALVMEFVPNGSLDKWLYSHNYFLHFIQRLNIYLHHGNSSKPMVHCDLKPSNVLLDNNMVAHVCDFGIAKLLEEGQSQMHTNTLATLGYIAPEYGSKGVVSIKGDVYSYGIMLMEVFTRKKPIDEMFAEELSLRSWIQESMPHGIIQLVIDPNLMEGEEQFISAKEAALSNIMVLALSCSADSPDDRMSMKE

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00786	660	9013	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000786s00023852.1	PF08263.7	LRRNT_2	33	71	7.20E-07
Glyur000786s00023852.1	PF00560.28	LRR_1	148	170	0.19
Glyur000786s00023852.1	PF08263.7	LRRNT_2	240	279	5.30E-07
Glyur000786s00023852.1	PF00560.28	LRR_1	356	378	0.19
Glyur000786s00023852.1	PF00560.28	LRR_1	585	604	0.75
Glyur000786s00023852.1	PF00560.28	LRR_1	766	786	0.29
Glyur000786s00023852.1	PF13855.1	LRR_8	812	872	2.10E-06
Glyur000786s00023852.1	PF07714.12	Pkinase_Tyr	987	1180	8.50E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.010
SRR1783600	control	0.010
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.062
SRR2868004	Drought Stress (root)	6.228
SRR2967015	Control (root)	4.012

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.013
SRR9715740	Leaf	0.009
SRR9715741	Leaf	0.032
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.010
SRR8749028	MeJA induced 9h	0.018
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.155
SRR8749031	Uninduced	0.131
SRR8749032	Uninduced	0.121

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.820
SRR8400027	Control - Root	2.189