Gene detail

Gene detail information of Glyur000785s00024165.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G11270.1	1.00E-58	overexpressor of cationic peroxidase 3
NR	XP_003523691.1	1.71E-136	PREDICTED: uncharacterized protein LOC100784216 [Glycine max]
trEMBL	tr\|I1JUE1\|I1JUE1_SOYBN	6.00E-137	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G07230.1}

Sequence

Transcript Sequence

>Glyur000785s00024165.1
TTAAACCCTGACTCCTTCCTGTGCCTGTCCCCGTGTAAAAGAAGATATTGGAGAAGGATGGCCGTTGCAATTCAGTGTTTATCATATGTTCGTTTCCCAGCAGTGGCAGGAGGGCCATCCATTCCTTCGCAATGCAAACCTCTTCTTTTCTCCCTCCCTCTCTCTCGGAATCTCTGCTCTCCAATTGTCGCCGCCTCTTCCAGAAAGAAAAACAAGAAAAACTTGTCTCAAAGCCATGTTACCGAGGGGGATGAGGACGCATTTGAGTTGCTCTTCAAGCAACTCGAAGAAGATCTCAAAAACGATGATTTGTCAAAAGATGATAGTGGCGAAGGCGATGAGATAACCGAAGAAGACCTCGCCTTACTTGAACGTGAGTTAGAAGATGCATTTGGGGACTTCGATACTCAGTTGTTGAACTCAGATACGGCCGAAACGGAAGGTGGTAATGATCCAGCAAATGACAGCGATGGTGAAGATGAAAGCCCACTGAAGCTTAAAACTTGGCAAATGAAGAAATTGGCCAGGGCTTTAAAAGCTGGCCGCCGCAAAACGGGTATAAAAGATCTTGCTGCCGAGCTCTGTCTTGATAGAGCCCTTGTTCTTGAATTGCTTCGTGACCCTCCTCCAAATCTTCTAATGATGAGCCTATCGATACCTGATGAACCCACACCGACAATAACACCACTTGAAACGAAGCCCAGTGACACTGTTTATAAAGAAACAAGTANAGATCATGCAAAATCTGAACCCGAGGCTAAAGTACCGATTCATGCCATGCAANGTAGTTGGTCTGCTCAAAAGAGATTGAAAAAGGCCCACATTGACACTCTGGAGAGAGTTTACAGTAGATCAAGACGGCCCACTGATGCAATGATCAGTAGTATTGTGCATGTAACAAAAATTCCTCGAAGAAGAGTTATTAAGTGGTTTGAAGAGAAACGAGCTGAGGAGGGAGTTCCAGATCACCGTGTTCCTTACCAGCGCTCTAGTTCTTGAAACTTCTTGAAGATTTTATGTTCTTTGATTTGTTTTTAATGATGGAAACTATGTCAGAAATCTTATAATTGTATAGAAAACTATGTTTCACCACTCCTGGTCATGTAAGGGGGTGAGNTATATGGGGAAGTTGAAGTAGTGATGATGGTGATTATTGGTTTGGTTATGACGCTGGCCATTGAAAATGGGGCTGCGATCCACTGATGCAGTGTGCAATTTTGGTCCTTTACATTCAATCTCAAATACCCATTAAAGTCTTCACTGGAGGGNGGTTTTCTAGTTCTTTTAGGTACATACAATAGTCTTTTGTGTGCAACGTTTCAATACCAAGATAATTTATTCTTAAGCNTTACGCAATGTTGCACAAGGGCAGATGATGCATCCATCCAAGTGTCAAACTAACACTTGAGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00785	104414	108066	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000785s00024165.1	PF00046.24	Homeobox	250	298	2.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.248
SRR1783600	control	22.152
SRR1783602	moderate drought stress	24.514
SRR1811619	moderate drought stress	24.223

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.373
DRR006520	Root Summer glycyrrhizin high producing strain	15.099
DRR006521	Root Winter glycyrrhizin high producing strain	16.469
DRR006522	Root Winter glycyrrhizin high producing strain	16.135
DRR006523	Root Summer glycyrrhizin low producing strain	19.513
DRR006524	Root Summer glycyrrhizin low producing strain	19.240
DRR006525	Leaf Summer glycyrrhizin high producing strain	30.182
DRR006526	Leaf Summer glycyrrhizin high producing strain	29.625

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.470
SRR2868004	Drought Stress (root)	7.663
SRR2967015	Control (root)	9.828

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.347
SRR9715740	Leaf	24.126
SRR9715741	Leaf	13.306
SRR9715739	Root	4.227
SRR9715742	Root	7.995
SRR9715743	Root	6.294

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.108
SRR8749028	MeJA induced 9h	13.004
SRR8749029	MeJA induced 9h	12.099
SRR8749030	Uninduced	6.536
SRR8749031	Uninduced	7.054
SRR8749032	Uninduced	5.801

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.904
SRR8400027	Control - Root	14.906