Gene detail information of Glyur000785s00024153.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11190.1 | 2.00E-52 | Integrase-type DNA-binding superfamily protein |
| NR | AFK46841.1 | 1.54E-102 | unknown [Lotus japonicus] |
| Swissprot | tr|Q3E958|SHN3_ARATH | 2.00E-76 | Ethylene-responsive transcription factor SHINE 3 |
| trEMBL | tr|I3T2U9|I3T2U9_LOTJA | 6.00E-103 | Uncharacterized protein {ECO:0000313|EMBL:AFK46841.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00785 | 50799 | 52285 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000785s00024153.1 | PF00847.15 | AP2 | 5 | 55 | 8.50E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.566 |
| SRR1783600 | control | 0.290 |
| SRR1783602 | moderate drought stress | 0.692 |
| SRR1811619 | moderate drought stress | 0.712 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.200 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.223 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.543 |
| SRR2868004 | Drought Stress (root) | 0.137 |
| SRR2967015 | Control (root) | 0.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.161 |
| SRR9715740 | Leaf | 0.605 |
| SRR9715741 | Leaf | 0.712 |
| SRR9715739 | Root | 0.190 |
| SRR9715742 | Root | 0.321 |
| SRR9715743 | Root | 0.458 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.179 |
| SRR8749028 | MeJA induced 9h | 0.344 |
| SRR8749029 | MeJA induced 9h | 0.402 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.172 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.538 |
| SRR8400027 | Control - Root | 0.651 |