Gene detail

Gene detail information of Glyur000785s00024152.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G15730.1	0	phospholipase D alpha 1
NR	XP_003603407.1	0	Phospholipase D alpha [Medicago truncatula]
COG	YP_003981721.1	3.00E-33	phospholipase D [Achromobacter xylosoxidans A8]
Swissprot	tr\|P86387\|PLDA1_CARPA	0	Phospholipase D alpha 1 {ECO:0000250\|UniProtKB:Q41142}
trEMBL	tr\|G7JB30\|G7JB30_MEDTR	0	Phospholipase D {ECO:0000256\|PIRNR:PIRNR036470}

Sequence

Transcript Sequence

>Glyur000785s00024152.1
ACCGAAGTAACAGTTCCCGTTTTTTTTTTTCCCTCATTCATTCACTCATTTTAATTACCCCCTGTGGTTAGGATACAGATTATAGCATAACAGGGGAGAAGTGTAAAACAGAATGCCTCAGCTGCTACATGGGACGCTTAAGGTCACCATAAGTGAAGTTGATAGGTTGCAACATGGATGTAATTTGGANTTCTGTCGGAAGATTGTTGGGACAAGACTTTATGCTACAGTTGATTTAGATAAGGCAAGGGTTGGAAGGACCAGAATGATAGGGAATCAAACCTCAAACCCCAAGTGGAAGGAAACCTTTGAAATTTATTGTGCTCATCACATCTCAAACATTATATTCACAGTCAAAGATGATAATCCAATTGGCGCCACTCTAATTGGAAGAGCATATATCCCTGTAAAGCAAGTTCTGAAAGGCCCCATAATTAATAGATGGGTTGAGATATTAGATGAGGAAGATCATCGTCCTGTACCAGGTGGCTCTAAAATTCGTGTCAGCGTGCAATTCTCTAATGTCACCGAGGATATACAATGTCCATGGTCTCAGGGAATACCCACTCCATTTTTGGGAGTTCCTCGTACATTTTTCGACCAGAGACAAGGTTGTAGTGTTACATTATACAAAGATGCTCATGTCCCTCATAGTGCTGATCACACGTGGATTACACTTTCAAGAACAAAATACTATATTCCTGGAAGATGTTGGGAGGACATTTACAATGCCATTATGGGCGCTAAGCACTTCATTTACATAACTGGTTGGTCTGTTTACACTGAAATAACCTTGATTAGGGAACCAANAACAAGTATCACACTTGGGGAGATGCTTAAGACAAAAGCCAATGAAGGTGTTAATGTTCTTATGCTTGTTTGGGATGACAGAACCTCTGTTCCAGCCCTGAAGAGAGATGGGTTAATGGCAACCCATGATCAGGAAATTGCAAATTACTTTAGAGACACAAAGGTGCATTGTGTTTTGTGCCCACGTAACCCGGATAATGGAAGAAGCATAGTCCAGGGTTTTGAAATCTCAACAATGTTCACTCATCACCAAAAGACTATAGTTGTTGATGGCCAAGTACTTGAAGGATCGCATAAGAGAAGAGTCACGAGTTTCATAGGTGGGATTGATCTTTGTGATGGAAGATACGATACTGAGGAACACCCTTTGTTTTCAACTCTAAATACAATCCATCATGATGATTTCCATCAACCAAACTTCCCGGGTGCTAACATCAAGAAAGGTGGTCCTAGAGAGCCATGGCATGATNTTCACTGCAAACTAGAAGGACCTATTGCATGGGATGTGTTGTACAATTTTGAGCAAAGGTGGGAGAAGCAAGGTGGGAAGCAATTCCTACTCTCAATTGATGAGCTTGATCAAATTCNGGTCCACCCATCTGATGCAGTGACTCGTGAAGAAGATAAAGAATCATGGAATGTTCAGTTGTTTAGATCCATTGATGGTGGTGCTGCTTCTAACTTCCCCCAGGCCCCAGATGAAGTTGTTGAATTAGGCCTTGTTACTGGGAAAGATAACATCATTGATAGAAGTATTCAGGATGCTTATATAAATGCTATCCGACGAGCAAAGAATTTCATCTACATTGAAAATCAATATTTCCTAGGGAGTTCATATGGTTGGCATGCATCTGATATTAAAGTTGAGGATATTGGGGCNTTGCATCTTATACCAAAGGAGTTATCACTGAAGATTGTTAGCAAGATTGAAGCAGGGGAAAGGTTTGTTGTGTACATAGTGATCCCAATGTGGNCAGAAGGTGTACCTGAAAGTGCTTCAGTTCAGGCAATATTAGATTGGCAAAGGAGGACCATGGAGATGATGTATTCTGACATTGCTGATGCCATAAAGAAGAAGAATATTGAAGCAGACCCTCGAGATTATTTGACATTCTTTTGCCTTGGTAAGAGGGAGGGCAAGAAAGAAGGGGAGTATACTCCTCCGGAGAAACCAGAGCCTGACAGTGACTATCAAAAAGCACAAAATGCTAGGAGGTTCATGATCTATGTTCATTCCAAGATGATGATAGTGGATGATGAATACATAATCATTGGTTCTGCCAACATTAACCAAAGATCAATGGATGGTGGTAGAGACACAGAGATTGCAATGGGTGCGTTCCAACCGCATTATCTAACAACATCGAGTACTAATGGCCTACAAAGAGCACAAGGTCAGATTTATGCGTTCAGGCGAGCATTATGGTATGAGCATATTGGGGATAACCATGATGATTTCGACGAGCCCGAAAGTGAGGAGTGTGTGAAACTTGTGAATCGTTTTGCTGAGATTAACTGGGAAATNTATTCCAATGACACATTTGATGGAAGAGTAACACCTCACCTTTTGTGCTACCCCATAAAAGTGACCAAAGATGGAACTATAACATCACTNCTTCAATTCTTTCCTGACACCAAGGCTCCGATTCTTGGTTCTAAATCTGAATACCTCCCTCCAATCCTTACCACCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00785	41215	45038	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01115	PLD1_2	EC:3.1.4.4	Glycerophospholipid metabolism	map00564
			Ether lipid metabolism	map00565
			Ras signaling pathway	map04014
			Phospholipase D signaling pathway	map04072
			Sphingolipid signaling pathway	map04071
			cAMP signaling pathway	map04024
			Endocytosis	map04144
			Fc gamma R-mediated phagocytosis	map04666
			GnRH signaling pathway	map04912
			Glutamatergic synapse	map04724
			Choline metabolism in cancer	map05231

Gene Ontology

biological_process
GO:0046470 phosphatidylcholine metabolic process

cellular_component
GO:0016020 membrane

molecular_function

GO:0003824 catalytic activity

GO:0004630 phospholipase D activity

GO:0005509 calcium ion binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000785s00024152.1	PF00168.25	C2	9	95	1.20E-12
Glyur000785s00024152.1	PF00614.17	PLDc	311	348	3.70E-09
Glyur000785s00024152.1	PF00614.17	PLDc	640	666	7.90E-08
Glyur000785s00024152.1	PF12357.3	PLD_C	716	787	3.90E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.345
SRR1783600	control	0.377
SRR1783602	moderate drought stress	0.555
SRR1811619	moderate drought stress	0.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.554
DRR006520	Root Summer glycyrrhizin high producing strain	1.562
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	2.196
DRR006524	Root Summer glycyrrhizin low producing strain	2.053
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.915
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.025

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.189
SRR2868004	Drought Stress (root)	1.994
SRR2967015	Control (root)	2.006

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.606
SRR9715740	Leaf	0.273
SRR9715741	Leaf	0.244
SRR9715739	Root	0.020
SRR9715742	Root	1.112
SRR9715743	Root	0.870

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.085
SRR8749028	MeJA induced 9h	0.054
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.013
SRR8749031	Uninduced	0.061
SRR8749032	Uninduced	0.159

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.786
SRR8400027	Control - Root	0.607