Gene detail information of Glyur000785s00024150.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25490.1 | 3.00E-94 | EIN3-binding F box protein 1 |
| NR | XP_003522614.1 | 0 | PREDICTED: EIN3-binding F-box protein 1-like isoform 1 [Glycine max] |
| COG | YP_008648.1 | 9.00E-11 | hypothetical protein pc1649 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q9SKK0|EBF1_ARATH | 7.00E-113 | EIN3-binding F-box protein 1 |
| trEMBL | tr|I1JUC8|I1JUC8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G07110.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00785 | 17208 | 20094 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000785s00024150.1 | PF00646.28 | F-box | 140 | 178 | 0.00011 |
| Glyur000785s00024150.1 | PF13516.1 | LRR_6 | 313 | 337 | 0.00056 |
| Glyur000785s00024150.1 | PF13516.1 | LRR_6 | 435 | 457 | 0.019 |
| Glyur000785s00024150.1 | PF13516.1 | LRR_6 | 460 | 483 | 0.011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 42.676 |
| SRR1783600 | control | 41.970 |
| SRR1783602 | moderate drought stress | 56.373 |
| SRR1811619 | moderate drought stress | 55.250 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.650 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.414 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.054 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.753 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.239 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.104 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 18.774 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 18.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 47.780 |
| SRR2868004 | Drought Stress (root) | 48.224 |
| SRR2967015 | Control (root) | 30.896 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.765 |
| SRR9715740 | Leaf | 17.126 |
| SRR9715741 | Leaf | 23.606 |
| SRR9715739 | Root | 52.001 |
| SRR9715742 | Root | 39.021 |
| SRR9715743 | Root | 40.407 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.088 |
| SRR8749028 | MeJA induced 9h | 9.963 |
| SRR8749029 | MeJA induced 9h | 1.501 |
| SRR8749030 | Uninduced | 2.702 |
| SRR8749031 | Uninduced | 2.824 |
| SRR8749032 | Uninduced | 3.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 60.274 |
| SRR8400027 | Control - Root | 69.626 |