Gene detail

Gene detail information of Glyur000784s00031240.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31940.1	4.00E-89	cytochrome P450, family 82, subfamily C, polypeptide 4
NR	XP_004488195.1	0	PREDICTED: cytochrome P450 82A3-like [Cicer arietinum]
COG	YP_001545288.1	1.00E-19	cytochrome P450 [Herpetosiphon aurantiacus DSM 785]
Swissprot	tr\|O49858\|C82A3_SOYBN	2.00E-128	Cytochrome P450 82A3
trEMBL	tr\|A0A072V8D1\|A0A072V8D1_MEDTR	0	Cytochrome P450 family protein {ECO:0000313\|EMBL:KEH37856.1}

Sequence

Transcript Sequence

>Glyur000784s00031240.1
ATGGCGCTTTATTTGGAAAGTTATGATGCACGACGCAAGCCACCTTTAGCCGCCGGTGGGTGGCCATTGATCGGTCACCTTCACCTCTTAGGTGGTTCAGATCAGCCTCCTTACATAACATTAGGAGCCTTAGCAGACAGGTACGGACCAATTTTCAGCATTCGATTCGGCGTGCACCAAGCCGTGGTGGTGAGCACGTGGGAACTAGCCAAGGAGATTTTCACCACTCTCGACGTCATAGTCTCGTCTCGTCCCAAATTCACGGCCGCAAAAATATTGGGACATGACTACGCCAATTTCGGGTTCTCCCCTTACGGAGACTATTGGCGCGAGATGCGAAAGGTGGAGAGATCAGTGACAGAGCTATATAGGGCGTGTGGTGGTGGATCGGATAGTTTTGTATTGGAGATGAAGCGATGGATGATTGCTGGGAAGCGATACTCCACTGAAGGTGACGATGAGGAAGAGGTGAGAAAGGTGAGGAGGATTCTCAGAGAGTTTTTTCGGCACGTGAAGGAGATGAAGAAAACGGCTGTGGAAATGGACAGCGTTCAGGACTTCATTGATGTTTTGTTGTCTGTCCTTGACGGCGTTGATCTTGCTGGTTATGATGTTGACACCGTCATCAAAGCCACCTGCTTGACCCTAATTGCTGGGGCTACTGACACTACAACAGTTACCATGACATGGGCACTCTCGTTATTGCTAAACAATCGCCACACATTGAAGAAACTCCAAGATGAATTGGATGAGCAAGTGGGGAGGGAAAGGCTAGTGAATGAATCAGACATCGACAACTTAGTTTACCTTCAAGCTGTGGTTAAAGAGACACTGCGATTGTATCCAGCTGGGCCACTCTCAGGTCCACGACAATTCACAGAGGATTGTAACCTAGGTGGGTTCCATATCCAAGCAGACCCATTAGAGTTTCAACCAGAAAGGTTCTTGAGTACTCACAAGGAAGTGGATGTGAAGGGTCGGCATTTTGAGCTTCTTCCATTTGGCGGCGGGAGAAGGTTGTGTCCTGGCGTATCATTTGGCCTTCAAATGACACACTTGGCATTAGCTGCTTTCTTGCAAGCATTTGAGGTCACAACACCATCCAATGCTCAGGTGGATATGAGCACCACGTTTGGACTCACAAACATCAAAACCACCCCACTTGAGGTTTTGGCAAAACCGCGTTTACCGTATCACCTTCTTTTAGATGATAAAGTAGCAGACTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00784	107853	111779	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP82C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000784s00031240.1	PF00067.17	p450	18	114	1.30E-08
Glyur000784s00031240.1	PF00067.17	p450	154	306	9.80E-33
Glyur000784s00031240.1	PF00067.17	p450	306	378	1.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	101.340
SRR1783600	control	104.040
SRR1783602	moderate drought stress	129.886
SRR1811619	moderate drought stress	130.320

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	33.924
DRR006520	Root Summer glycyrrhizin high producing strain	32.784
DRR006521	Root Winter glycyrrhizin high producing strain	12.393
DRR006522	Root Winter glycyrrhizin high producing strain	11.850
DRR006523	Root Summer glycyrrhizin low producing strain	103.610
DRR006524	Root Summer glycyrrhizin low producing strain	105.898
DRR006525	Leaf Summer glycyrrhizin high producing strain	93.933
DRR006526	Leaf Summer glycyrrhizin high producing strain	95.674

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.706
SRR2868004	Drought Stress (root)	120.162
SRR2967015	Control (root)	130.904

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	124.422
SRR9715740	Leaf	235.553
SRR9715741	Leaf	230.042
SRR9715739	Root	82.825
SRR9715742	Root	141.651
SRR9715743	Root	137.074

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	45.574
SRR8749028	MeJA induced 9h	121.394
SRR8749029	MeJA induced 9h	48.125
SRR8749030	Uninduced	120.545
SRR8749031	Uninduced	68.352
SRR8749032	Uninduced	37.047

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	99.258
SRR8400027	Control - Root	84.468