Gene detail

Gene detail information of Glyur000784s00031231.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19810.1	7.00E-93	Glycosyl hydrolase family protein with chitinase insertion domain
NR	AFK36566.1	0	unknown [Lotus japonicus]
COG	YP_007146068.1	7.00E-33	chitinase [Cylindrospermum stagnale PCC 7417]
trEMBL	tr\|I3S8H4\|I3S8H4_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK36566.1}

Sequence

Transcript Sequence

>Glyur000784s00031231.1
TGGGGTGAGGGTACAATAGAGAGATAGAGAGACAACGGAAGTGAAAATAATAGGGTTTGAAAAATCAAACTTTTTACGTCACTATCACCTTAATTGTTTGTTTGACATTATTCATTTGCTTGTGAATCTATATATAGTATAACCGATCATAGTCCAATTTGCATCAGCATCAACAAAAATGGCCTACTCCAAGAAGCTTTCGTTCCTTATTCCCACCCTCCTTATGTTCCTCCAACTCCAATTCCCCTCTTCAAAGGCTGCCATCAAAGGTGGCTATTGGTATTCTGATAGTGGCCTTGCAGTTTCTAACATCAACCCCTCTCATTTCACCCACCTCTTCTGTGCATTTGCTGACCTTGATTATAACACCAACCAAGTCACCATCTCTACATCAAACGCAGCACCATTCTCAACCTTCACCCAAACCCTCCAGGCAAAAAACCCTTCAGTGAAGACCCTTCTATCCATTGGTGGTGGGGGTGGTCCTTCTCTGGCAGNAAATTTTTCCAGAATGGCTAGCCAAGCCAATACCCGCAAAACATTCATAGACTCTTCAATTCAACTAGCCAGAAGAAACAACTTCCATGGCCTTGATCTTGACTGGGAGTACCCTTCCTCAGACACAGACAAGACCAACTTTGCNTCACTCATCAAGGAGTGGAGAGCAGCAGTGGCCCAAGAGTCTAGCACTTCTGGAAAACCAGCACTGCTGTTATCTGCAGCAGTTGGTGGCTCTGACCAAATCACCCCATTGAACTACTACCCAGGTCAGGATATTGCAAACAACTTTGATTGGGTCAATGTAATGACTTATGACCTTTTCACCTCAGATGGGTATCGAACCAAGACACAGGCACCTGCTCCTTTGAAAAACCCAGGTGGCATATTCAGTGTAGAGGAAGGGATCACAAAATGGATTAATCAGTTAAATGTGCCAAGGAACAAACTAGCTCTGGGTTTACCCTTCTATGGTTTCAAGTGGAGTTTGTCAGATCCTAATAGGCATGGATTGTTTGCGGATGCTAANCAGGGACTTGGGGCAGTGAAGTACAAGGATATAAAAAATGCTGGGGCACAGGTTGTGTACAATTCCACATATGTTACTAATTACTGCTATAAAGGGACAGATTGGTATGGCTATGATGACACTCAGAGTATATCTGCCAAGGTTGCTTATGCCAAGCAAAATTCNTTGTTTGGATACTTTTCTTGGCATATTGAACAAGACAGCAACTGGGCTCTTTCTCAGGCCGCTTCTCAAGCATGGGGAAGTTAGGACTAGTAATGGATTCCAGAAGTGAAATAAAGATAGGGAGCTATGCCTATCTACATTATAATAAAGTTACACCTTTATATCCTACCAATGTAACAATAAAAAATAAGAATGAAATATTAAAGGATCTANAACGACAGGAAATAAAATCACACTTGCTTCGCTTCTCTTGTGCTATTCTATAAGGAGACTTTTACTATAATTTTTTAGCTTCTCAGACATGGGAATCGTAGATTTAGATTGCTGAGCAAGAGTCGTATATTGCTACAAAAATAAACCTCCATTTCAGCTCTGATATGGCTGGTTTTGCTGTCCACC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00784	21444	23307	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH18

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01183	E3.2.1.14	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006032 chitin catabolic process

molecular_function

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0004568 chitinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000784s00031231.1	PF00704.23	Glyco_hydro_18	33	350	2.30E-82

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	62.028
SRR1783600	control	62.116
SRR1783602	moderate drought stress	33.626
SRR1811619	moderate drought stress	33.535

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.517
DRR006520	Root Summer glycyrrhizin high producing strain	8.435
DRR006521	Root Winter glycyrrhizin high producing strain	0.981
DRR006522	Root Winter glycyrrhizin high producing strain	0.956
DRR006523	Root Summer glycyrrhizin low producing strain	12.887
DRR006524	Root Summer glycyrrhizin low producing strain	12.988
DRR006525	Leaf Summer glycyrrhizin high producing strain	334.869
DRR006526	Leaf Summer glycyrrhizin high producing strain	331.640

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.530
SRR2868004	Drought Stress (root)	41.928
SRR2967015	Control (root)	21.130

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	123.821
SRR9715740	Leaf	97.681
SRR9715741	Leaf	48.864
SRR9715739	Root	19.088
SRR9715742	Root	40.683
SRR9715743	Root	35.225

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.090
SRR8749028	MeJA induced 9h	1.659
SRR8749029	MeJA induced 9h	0.905
SRR8749030	Uninduced	0.973
SRR8749031	Uninduced	2.197
SRR8749032	Uninduced	0.597

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	97.441
SRR8400027	Control - Root	112.015