Gene detail information of Glyur000783s00023129 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | ABO80459.1 | 1.18E-07 | RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H [Medicago truncatula] |
| trEMBL | tr|A4PSD6|A4PSD6_MEDTR | 4.00E-08 | RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H {ECO:0000313|EMBL:ABO80459.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00783 | 91092 | 94014 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.574 |
| SRR1783600 | control | 3.729 |
| SRR1783602 | moderate drought stress | 5.454 |
| SRR1811619 | moderate drought stress | 5.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.288 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.121 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.030 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.293 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.495 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.497 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.408 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.783 |
| SRR2868004 | Drought Stress (root) | 0.629 |
| SRR2967015 | Control (root) | 1.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.351 |
| SRR9715740 | Leaf | 0.725 |
| SRR9715741 | Leaf | 0.520 |
| SRR9715739 | Root | 0.569 |
| SRR9715742 | Root | 0.902 |
| SRR9715743 | Root | 0.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.570 |
| SRR8749028 | MeJA induced 9h | 0.794 |
| SRR8749029 | MeJA induced 9h | 2.493 |
| SRR8749030 | Uninduced | 0.345 |
| SRR8749031 | Uninduced | 0.368 |
| SRR8749032 | Uninduced | 0.744 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.666 |
| SRR8400027 | Control - Root | 2.355 |