Gene detail

Gene detail information of Glyur000783s00023124.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20930.1	5.00E-145	cyclin-dependent kinase B2;2
NR	AFK45428.1	0	unknown [Lotus japonicus]
COG	YP_003131953.1	1.00E-17	protein kinase family protein with PASTA domain-containing protein [Saccharomonospora viridis DSM 43017]
Swissprot	tr\|Q8LG64\|CKB22_ARATH	0	Cyclin-dependent kinase B2-2
trEMBL	tr\|I3SYT6\|I3SYT6_LOTJA	0	Uncharacterized protein {ECO:0000313\|EMBL:AFK45428.1}

Sequence

Transcript Sequence

>Glyur000783s00023124.1
ATGGAGAAAACGGGAGCAGCAGTATTATCGGCGAAGGAGGCATTCGAGAAGCTGGAGAAGGTTGGAGAAGGGACGTATACAGGGCAAGAGAGAAAGCCACTGGGAAGATCGTTGCGCTCAAGAAGACTCGCCTCCCACGAGGACGAAGAAGGTGTCCCTCCCACCACTCTCCGTGAGGTCTCCATTCTGCGAATGCTCTCTCGCGATCCCCATGTCGTCAGGTTAATGGATGTAAAACAAGGTCAGAACAAGGAAGGGAAGACAGTGCTCTACTTGGTCTTCGAGTACATGGATACTGATCTCAAGAAATTCATTCGCAGTTTCCGTCAAACTGGAGAAAACATCCCGCCCAAAATCATCAAAAGCTTGATGTACCAACTTTGCAAGGGCGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGGAAAACAACGATGCTTAAAATAGCTGATCTTGGACTTGCTCGCGCGTTTACTGTGCCAATTAAGAAGTACACGCATGAGATACTGACCCTGTGGTATAGAGCTCCTGAAGTCCTTTTGGGAGCTACCCATTACTCAATGGCGGTGGATATGTGGTCCGTTGGCTGCATATTTGCTGAGCTTGTCAACAAGCAAGCACTCTTTCCTGGTGATTCCGAGCTCCAACAACTCCTCCATATATTCAGGCTGTTGGGCACTCCTAACGAAGAGGTTTGGCCAGGCGTTAGTAAACTAATGAACTGGCATGAGTACCCTCAGTGGAGCCCTCAAAGTCTTTCAACAGCTATTGCAAATTTGGATGAGTCTGGACTGGATCTACTATCCCAAATGTTGCAATATGAACCTTCCAAGCGGATTTCTGCCAAGAAAGCTATGGAGCANCCTTACTTTGATGACCTGGTCAAGACCTATCTTTAGGAACAACAAATGACAAAATGATCTGGATGTAGGAATCCTTTATTACCAATTTATTATGCTTCTCTCGAGCGCANATCAAAATCTGTTTTAGGATGATTAACTTTTGCCGTCTTATTTTCGTATTCCAAGAATCGTGGATGCCCTTTTGGCTCTTAGGGGTTTGGATCATAGTACTTTTATGATGACCAAAACAATCGTCAAGGTGTTTTTGTCACCCCTTAAATTGTGATCTATTTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00783	68638	70596	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000783s00023124.1	PF00069.20	Pkinase	35	302	9.30E-58

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.095
SRR1783600	control	14.220
SRR1783602	moderate drought stress	9.273
SRR1811619	moderate drought stress	9.124

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	20.617
DRR006520	Root Summer glycyrrhizin high producing strain	20.667
DRR006521	Root Winter glycyrrhizin high producing strain	1.332
DRR006522	Root Winter glycyrrhizin high producing strain	1.462
DRR006523	Root Summer glycyrrhizin low producing strain	5.845
DRR006524	Root Summer glycyrrhizin low producing strain	6.129
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.393
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.303

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	79.961
SRR2868004	Drought Stress (root)	36.114
SRR2967015	Control (root)	43.993

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.151
SRR9715740	Leaf	2.878
SRR9715741	Leaf	6.529
SRR9715739	Root	14.991
SRR9715742	Root	11.382
SRR9715743	Root	10.208

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	151.772
SRR8749028	MeJA induced 9h	59.598
SRR8749029	MeJA induced 9h	90.243
SRR8749030	Uninduced	1.848
SRR8749031	Uninduced	1.054
SRR8749032	Uninduced	4.052

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	65.046
SRR8400027	Control - Root	49.157