Gene detail

Gene detail information of Glyur000783s00023119.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G76680.1	2.00E-124	12-oxophytodienoate reductase 1
NR	XP_003545002.1	0	PREDICTED: 12-oxophytodienoate reductase 1 isoform X1 [Glycine max]
COG	YP_007124434.1	1.00E-92	NADH:flavin oxidoreductase [Microcoleus sp. PCC 7113]
Swissprot	tr\|Q8LAH7\|OPR1_ARATH	9.00E-154	12-oxophytodienoate reductase 1
trEMBL	tr\|I1MBY3\|I1MBY3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G39790.1}

Sequence

Transcript Sequence

>Glyur000783s00023119.1
GTTGTGAACTAAGTGGAAAGAGGAGGTTGACCAAACATCAACACGATGACAGAAGGAGAAAGTTATCCAGTAGTAGAGCGAAGAGAGGCAATACCCCTGCTGACCCCATACAAGANGGGAAACTTTAATCTATCCCATAGGATAGTGTTGGCACCGTTAACACGATCAAGGTCTTACAACTTTGTCCCTCAGCCTCATGCTGCTCTATATTACTCTCAAAGAACAACTAGGGGTGGCTTCTTGATTGGGGAAGCCTCTGGTGTGTCTGATACAGCGCAAGGGGAACAAGTAGAGGCGTGGAAACCAATTGTGAGTGAAGTTCATGAAAAGGGGGGATATTCTTCTGTCAACTTTGGCATGCAGGCAGAGTATCCAACAATGGTACACAAGCCCCTTCGGAAGGATATCTTCAACATTAATGTTGCAGCTAATAAATACCCACCTCCTCGCCGGCTAAGAACAGATGAAATCCCCATGCTTGTTAATGACTTCAGAATTGCAGCCAAAAATGCCATGGAAGCAGGTTTTGATGGAGTAGAGATACACGGAGCGAACGGGTACTTGCTGGATCAGTTCCTAAAGGACAAAGTGAACGACAGAGATGATGAGTATGGAGGTAGTTTGGAGAACCGTTGCCGCTTCCCACTGCAAGTGGTGAAGGCAGTAGCTGATGAGATCGGAGCTGATAAGGTTGGTGTCAGGCTGTCCCCTTTTGCTGACTATAATGATTGCCAAGACTCTGACCCTCAAGCATTGGGACTTCACATGGCTCAATCACTGAGTCAACTGGGCATTCTCTATTGTCACATGATTGAGCCCAGGATGGTCACACAATTCCACAAGTCTGACTCTAACACCCACACCAACAAGGGGTCCCTTATGCCAATTAGGAAGGTCTTCAACGGGACCTTTATTGTTGCTGGTGGTTACGATAATAGGAGTGAGGGAAACCGAGTTATAGCATGTGATGCTGCCGATTTGGTGGCTTATGGACGCCTATTTTTGGCTAACCCAGATCTCCCTACCAGATTTGAGCTGAATGCTGAGTTAAACCAGCCCGATACAACTACCTTTTATACACATGATCCCGTGCTTGGATATACTGATTATCCATTTCTTCAAAACACTACTAGTCCTAGCTAGTCTAAAAACCAAGTAGTCCAAAGTTCAATTAATGCCTATTTTGTGCTGTGTTGGTCGTGCACTCCTTTATGTCCTTGTCACCCTTTTCCCATACTCGATCATCCAAGAATTATTATCAACCATAATATCTCAAGTCATGCAAAATCATGAAGTGCTGCATACATTAAATTATAATAATAATATTTTCTGCACCATCGTCACCGATTAAATTATGCAGTGGACACGATC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00783	34296	38355	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K05894	OPR	EC:1.3.1.42	alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0003824 catalytic activity

GO:0010181 FMN binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000783s00023119.1	PF00724.15	Oxidored_FMN	18	335	2.50E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.102
SRR1783600	control	0.101
SRR1783602	moderate drought stress	0.251
SRR1811619	moderate drought stress	0.188

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.162
DRR006522	Root Winter glycyrrhizin high producing strain	0.158
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	55.488
DRR006526	Leaf Summer glycyrrhizin high producing strain	54.656

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.495
SRR2868004	Drought Stress (root)	4.454
SRR2967015	Control (root)	6.819

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	25.317
SRR9715740	Leaf	41.077
SRR9715741	Leaf	23.530
SRR9715739	Root	0.283
SRR9715742	Root	0.156
SRR9715743	Root	0.458

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.197
SRR8749028	MeJA induced 9h	0.124
SRR8749029	MeJA induced 9h	0.166
SRR8749030	Uninduced	0.386
SRR8749031	Uninduced	0.422
SRR8749032	Uninduced	0.576

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.263
SRR8400027	Control - Root	1.202