Gene detail

Gene detail information of Glyur000783s00023117.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G30600.4	BTB/POZ domain-containing protein
NR	AES98295.2	BTB/POZ domain plant protein [Medicago truncatula]
Swissprot	tr\|Q8LEV3\|Y2060_ARATH	BTB/POZ domain-containing protein At2g30600
trEMBL	tr\|G7JYH5\|G7JYH5_MEDTR	BTB/POZ domain plant protein {ECO:0000313\|EMBL:AES98295.2}

Sequence

Transcript Sequence

>Glyur000783s00023117.1
ATGGGGGAGAAGTTCCTGACGGTGCCGCCATTTGAGTGCGCGTGGCGAGAGGATTTGAAGTTCCGGGAAGCGGGTCGGGGCTGCGTGGCTTTCGAAGCATTCGCCTGCAACGATGTCACGCTGGTTTTCCGGGAGAATGTGGGAAGCCAGGGCTACCACTANAAAAGAGACAGCAGCCCTCACTACACGATCATATTGGGGAGTCACAGGAATCGACGGCTCCGAATCGAGGTCAACGGTAAAACCGTCGTTGACGTGGCAGGGGTTGGCCTTTGCTGCTCCACCTCATTCCGGAGCTATTGGATCAGCATCTACGATGGCTTCATCAGCATAGGCAATGGGAAATACCCTTTCCAGGANGTTGTCTTCCAGTGGGTGGATTCTCACCCCAGTTGTAATGAAAGACCTGTTCCTGCTCACAAGGCTATCTTGGCTGCATCTGGAAACTTTCCTCTGTGCTCCTCCTCCTTTGTCATCACACTGCCCACCGTGTCTTATCCGCTTCTCCANGCACTGCTTCACTACATCTACACTGGTTGGACCCAGATTCCACAGGACCAACTTGGTTCTTTGAGGGCTTTGAGCCTACAGTTTGAAGTTATGCCACTGGTGAAGCAATGTGAAGAAACTATGGAACGGTTTAAGCTAGATAAGAAGTTGTTTGACACGGGCAAGAATGTAGAGTTGACATATCCATATATCGGACCCCATTGTTCAACTTTGCCCTCACTTCCTGTCAGCATTCAGAGACTGAGACAATTGAAATTGTCAGGCCAGTACAGCGATGTGAACATCTACATCGAGAGTTATGGGTTTGTTGCACGGGCACATAAAATTGTTCTCAGCTTATGGAGTATCCCCTTTGCCAAGATGTTCACAAATGGAATGAGTGAAAGCATGTCATCAGAGGTTACTTTACGGGATGTGCCACCAGAAGCTTTCAAGGCTATGCTTGACTTTTTATATGATGGGCAACTGAATGAGAAAATTATCGATTCTGGTTCTTTGTTGCTCCAACTCCTTTTATTGGCTGATCAATTTGGAGTGACTTTTCTTCACCAAGAATGCTGCAAAGTGCTTTTAGAATGCCTCTCAGAGGACTCTGTATGTCCACTCCTCCTAGTGGTTTCTTCAATCCCATCATGTAGACTTGTTAAAGAAACACTGCAGAGGAGAATTTCNATGAACTTTGACTATTGTATCAGTGCGAGTACTGACTTTGTTTTGTTAGATGAGGCAACATTCATCAATATCATTAAGCATCCAGATCTGACAGTAACATCTGAAGAGAAAGTTCTTAATGCAATCCTAATGTTCGGCATGAAAGCAAAAGAATTATTTGGGTGGGAAGTGGTGGATCAGTTAATAATGAATTCAAAACCTGAACTCCTTTTTGGTGAGAGGCTTCAGTTAGTTTATGACCTGTTGCCGTTTGTGCGATTTCCACTACTACAATATTCCTTACTTGATAAGTTGCAGAATAGCAACATTTTCAGGCATATTCCTGTTCTCCAAAGTCTCGTTAATGAGGCAATCAATTTTGTTAAATGTGGGCTGGGAAGGCCAGAAAATGAAGAGAATGTTAGATTCCAACATAGACGGTCTAGTTACAAGGAGCTCCAGTATATTCGTGACGGGGATGACCATGGAGTTCTGTACTTTGCAGGTACATCCTATGGTGAACACCAGTGGGTTAATCCTCTTTTGGCAGAGCAAAAGAAAATCACAATTACAGCCAGCAGTCCCCACTCAAGATACACTGATCCCAAGGTTTTGGTCTCAAGAACCTACCAGGGAACATGTTTTGCTGGGCCTCGTTTGGAAAATGGACATAACTGTGCCTGGTGGATGGTTGATCTTGGACAAGATCATCAGCTTATGTGCAACTACTATACCCTGAGGCAGGACGGTTCCAAGGCCTTTCCGAGATGTTGGAATATTCAGGGGTCACTGGACGGGAAGAGCTGGAGGAACTTGAGAGTCCATGAAAATGACCGGACAGTATGTAAACCTGGNCAGTTTGCATCTTGGCCCATAGTTGGCCCCAACGCTTTGCTTCCCTTTAGGTATTTCCGGGTTGTTCTCACAGGACCAACTACCGATATCACCAATCCTTGGAACTTCTGCATTTGTTACTTGGAACTATATGGCTACTTCCTCTAAAACGCTTGGCTCTGATAGGATAGGCACATCCATACCATNCCGTTCTTACTTTCCTAATTATTACGACTCCAGCTCCCTCATGCACGTTACNTTATGGTTTGCTTATCGACTAAATTATTTGAATGTATAATTTGTGTATAAGGTTCATACTGTTTACTTAAAAAAAAAATGAAGTTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00783	16160	22382	-

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000783s00023117.1	PF12248.3	Methyltransf_FA	46	127	2.60E-15
Glyur000783s00023117.1	PF00651.26	BTB	132	212	7.40E-08
Glyur000783s00023117.1	PF00651.26	BTB	252	362	1.80E-20
Glyur000783s00023117.1	PF07707.10	BACK	376	440	5.90E-06
Glyur000783s00023117.1	PF00754.20	F5_F8_type_C	576	697	2.10E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	53.116
SRR1783600	control	54.130
SRR1783602	moderate drought stress	139.212
SRR1811619	moderate drought stress	138.277

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	57.607
DRR006520	Root Summer glycyrrhizin high producing strain	56.690
DRR006521	Root Winter glycyrrhizin high producing strain	31.707
DRR006522	Root Winter glycyrrhizin high producing strain	31.379
DRR006523	Root Summer glycyrrhizin low producing strain	58.867
DRR006524	Root Summer glycyrrhizin low producing strain	59.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.397
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.343

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.475
SRR2868004	Drought Stress (root)	101.688
SRR2967015	Control (root)	178.746

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	40.628
SRR9715740	Leaf	66.907
SRR9715741	Leaf	84.884
SRR9715739	Root	12.553
SRR9715742	Root	38.250
SRR9715743	Root	29.320

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.457
SRR8749028	MeJA induced 9h	37.664
SRR8749029	MeJA induced 9h	20.799
SRR8749030	Uninduced	34.830
SRR8749031	Uninduced	73.770
SRR8749032	Uninduced	111.574

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.067
SRR8400027	Control - Root	23.643