Gene detail information of Glyur000783s00023115 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76280.2 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004512612.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At1g76280-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q9SGQ6|PP126_ARATH | 0 | Pentatricopeptide repeat-containing protein At1g76280 |
| trEMBL | tr|A0A072UCA2|A0A072UCA2_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH26673.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00783 | 3181 | 11046 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000783s00023115.1 | PF01535.15 | PPR | 76 | 98 | 0.0065 |
| Glyur000783s00023115.1 | PF01535.15 | PPR | 113 | 138 | 0.92 |
| Glyur000783s00023115.1 | PF13041.1 | PPR_2 | 306 | 348 | 9.50E-08 |
| Glyur000783s00023115.1 | PF13041.1 | PPR_2 | 530 | 573 | 1.40E-11 |
| Glyur000783s00023115.1 | PF01535.15 | PPR | 600 | 629 | 0.021 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.444 |
| SRR1783600 | control | 4.295 |
| SRR1783602 | moderate drought stress | 4.849 |
| SRR1811619 | moderate drought stress | 4.816 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.849 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.502 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.011 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.739 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.601 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.369 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.854 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.888 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.048 |
| SRR2868004 | Drought Stress (root) | 7.721 |
| SRR2967015 | Control (root) | 8.367 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.354 |
| SRR9715740 | Leaf | 7.003 |
| SRR9715741 | Leaf | 6.702 |
| SRR9715739 | Root | 0.441 |
| SRR9715742 | Root | 4.120 |
| SRR9715743 | Root | 3.252 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.491 |
| SRR8749028 | MeJA induced 9h | 15.167 |
| SRR8749029 | MeJA induced 9h | 12.506 |
| SRR8749030 | Uninduced | 5.905 |
| SRR8749031 | Uninduced | 6.758 |
| SRR8749032 | Uninduced | 5.296 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.390 |
| SRR8400027 | Control - Root | 10.689 |