Gene detail information of Glyur000782s00036635.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15740.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004488503.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 2.00E-81 | Uncharacterized protein At1g04910 |
| trEMBL | tr|G7IT24|G7IT24_MEDTR | 0 | GDP-fucose O-fucosyltransferase-like protein {ECO:0000313|EMBL:AES65954.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00782 | 82112 | 86200 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000782s00036635.1 | PF10250.4 | O-FucT | 130 | 451 | 1.80E-91 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.159 |
| SRR1783600 | control | 18.266 |
| SRR1783602 | moderate drought stress | 12.528 |
| SRR1811619 | moderate drought stress | 12.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 27.642 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 27.383 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.634 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.471 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 30.782 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 30.201 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.737 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.743 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 27.912 |
| SRR2868004 | Drought Stress (root) | 25.068 |
| SRR2967015 | Control (root) | 26.354 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.736 |
| SRR9715740 | Leaf | 20.364 |
| SRR9715741 | Leaf | 21.011 |
| SRR9715739 | Root | 22.667 |
| SRR9715742 | Root | 48.398 |
| SRR9715743 | Root | 43.340 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.417 |
| SRR8749028 | MeJA induced 9h | 16.684 |
| SRR8749029 | MeJA induced 9h | 9.244 |
| SRR8749030 | Uninduced | 6.845 |
| SRR8749031 | Uninduced | 3.285 |
| SRR8749032 | Uninduced | 4.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 41.737 |
| SRR8400027 | Control - Root | 50.524 |