Gene detail

Gene detail information of Glyur000781s00024259

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G24320.1	0	MUTL protein homolog 1
NR	XP_004497789.1	0	PREDICTED: DNA mismatch repair protein MSH1, mitochondrial-like [Cicer arietinum]
COG	YP_001278010.1	1.00E-27	DNA mismatch repair protein MutS [Roseiflexus sp. RS-1]
Swissprot	tr\|Q84LK0\|MSH1_ARATH	0	DNA mismatch repair protein MSH1, mitochondrial (Precursor)
trEMBL	tr\|G7I6Q0\|G7I6Q0_MEDTR	0	DNA mismatch repair protein {ECO:0000313\|EMBL:AES60434.2}

Sequence

Transcript Sequence

>Glyur000781s00024259.1
GACAGAGAGACCGACACAAGTTTTTGNTCAGTCGTTTCACTTTCATGTTACTGTCAAACAAAATCCCTCGTTGCGAGCGTGTGGCGGGAAATCACCTAGCTTNCCCCTGTGTCTGTGTTTGGGGTTTTAAGCGAAGGAGTCGAAAACCCACCAAACAGAAACAGCACTCTTCACTTCACCTCAACAGAACAAAACAGAACAAACCCATCCACCGCCACTTGACAATGTACAGGCTAGCCACTCGAAACGTCGTCGTATGCTTCCCTCGCTCCTGGCGCTCCCTTTCTTCTCCCTTCCTTCACTCTCCTCCTCCCTCTACCTACATTTCATTCTTTCCCTCTCGCTTCCTTCGAATAAATGGATGTCTAGGGAACATATCATCTTTTAAAGTCGGGAAAGCTTCAAGGGGAAGTGGTAAAGTGACCAAGAAGCTCAAAGAGCTAAATAATGTTTTAGATGATAAAGATCATTCTCACATATTATGGTGGAAGGAGAGGTTGCAGATGTGCAAAAAGCCTTCAACAGTCCAGCTAATTGAAAGACTTGACTATACTAATTTGCTTGGCCTGGATTCTAAGTTGAAACATGGAAGTCTGAAGGAAGGAACACTCAACTCGGAAATGTTGCAGTTCAAGTCAAAATTTCCACGCCAAGTTTTTCTCTGCAGAGTTGGGGACTTCTATGAAGCTTTTGGAATAGATGCTTGTATTCTTGTTGAATATGCGGGTTTGAATCCCTTTGGTGGTCTACAGTCAGATAGCATTCCTAGAGCTGGTTGCCCTGTTGTGAATCTTCGACAGACTTTGGATGATCTGACACGTAATGGTTATTCAGTGTGCATTGTGGAGGAAGTTCAGGGCCCAACTCAAGCTCGATCCAGGAAACGTCGCTTTATATCTGGGCATGCTCATCCAGGAAATCCATATGTATATGGACTTGCTGGGGTTGATCACGATATTGACTTTCCAGAACCAATGCCTGTAGTAGGAATTTCTCATTCTGCAAGGGGCTATTGCATTAATATGGTCCTAGAGACCATGAAGACATATTCTTCAGAAGACTGCCTGACAGAAGAAGCAGTTGTTACAAAGCTTCGTACTCGTCAATACCATCACTTATTTCTACATACATCTTTGAGGAGGAATTCTCGTGGAACCTCCAATTGGGGAGAATTTGGTGAGGGGGGCCTATTGTGGGGAGAATGTAGATCCAGACATTTTGAATGGTTTGATGGCAACCCTATCTCTGATCTTTTGGTCAAGGTAAAGGAGCTTTATGGTCTTGATAATGAGGTTACATTTCGGAACACAACTGTTTCTTCAGGNAATAGGGCTCGATCTTTAACTCTTGGAACATCTACTCAAATTGGTGTCATTCCGACAGAGGGAATACCTTCTCTGTTGAAGGTGTTACTTTCACCAAAATGCAATGAATTACCAGTAATGTATGTAAGGGATCTTCTTTTGAATCCTCCTTCCTATGAGATTGCATTCAAAATTCAAGCAACATGTAAACTTATGAGCAGTGTAACATGTTCAATTCCAGATTTTACGTGTGTTTCTTCAGCAAAGATTGTAAAGCTACTTGAATGGAAGGAGGCCAATCATATTGAACTTTGTAGAATAAAGAATGTGCTTGATGAAATTTTGCACATGTACAGAACCCCTGAGCTCAACGAAATATTGAAACATTTAATTGATCCCACATGGGTGGCTACTGGGTTAGAAATTGACTTCAAAACCTTGGTTACTGGATGTGAAGTCGCATCTGGTAAGATCGGTGAAATAATATCTCAGGATGGTGAGAAAGATCAGAAATTCAGCTCCTTCTCTGATATTCCTAATGAATTTTTTGAGGATATGGAGTCTGTGTGGAAATGTCGAATAAAAACAATCCACATAGATGATGTACTTACTGCTGTGGAAAAAGCAGCCAAGGCCTTGCATTTAGCAGTCACTGAAGATTTTACTCCTGTTGTGTCTAAAATAAAAACTTCTATGGCTCCACTTAAAGCTCCTAAGGGAGAAATATCTTATGCTCGGGAGCATGAAGCAGTGTGGTTCAAGGGTAAATGCTTTGTACCAAATTTATGGACTGGTACCCCTGGAGAGGAACAAATTAAACAGCTTAAACATGCTTTAGATTCTAAAGGTAGAAAGGTAGGCGAGGAATGGTTTACCACTTTGAAGGTGGAGGATGCCTTAACAAGGTACCATGAAGCAAATGGCAAGGCAAAAGCAAGAGTTTTGGAACTTATACGGGGACTTGCTACTGAATTGCAATCCCATATAAACATCCTTGTCTTTTCCTCCACGTTGCTTGTTATTGCCAAAGCTTTATATGCTCATGTGAGTGAAGGGAGAAGAAGGAAATGGATTTTTCCTACAGTAGTAGAATCCCAGGGGTCTGAGGATGTGAAGCTGTTGGACAAAAACCATGGGATGAAGATAGTTGGTTTATTACCATATTGGTTCAACATAGCAGAAGGAGGTGCTGTGCGAAATACTGTGGATATGAAATCATTATTTCTTTTGACAGGACCAAATGGTGGTGGGAAATCAAGTATACTCAGGTCAATTTGTGCTGCTGCACTACTTGGGATATGTGGATTTATGGTTCCTGCTGAATCAGCCCTGATTCCTTATTTTGACTCTATCATGCTTCATATGAAGTCTTATGATAGTCCAGCTGATCAAAAAAGTTCATTTCAGGTGGAGATGTCCGAACTTCGATCCATCATTTCTGGAACCACCAAAAGGAGCCTTGTGCTTGTGGATGAGATATGCCGAGGAACAGAAACTGCAAAAGGGACTTGTATTGCAGGCAGCATCATTGAAACTCTTGATAAAATTGGCTGTCTCGGTATTGTATCGACTCACTTGCACGGAATATTTACCTTGCCACTAAACATTAATAANACTGTGTACAAAGCAATGGGCACAACATGCATTGATGGACAAACAAAGCCTACGTGGAAGCTGACAGATGGAGTCTGTAAAGAAAGTCTTGCTTTTGAAACAGCCAAGAGAGAAGGAATTCCGGAGACTATTATCAATAGAGCTGAAGATCTTTATCTGTCAGTTTTTGCTAAGAAACTGCTTTCTGAAGAAAATTTCACAAAACAGGAAGAATTTTCTACTTACATCAATGTTAATAGTTTTAATGGAACAAATCTTCATTCCAAAAAGTTTATATCAGGAGCTTCTCATGGGGGAATTGCTTTAGCTAATCAAATGGAAGTTTTGCACAAGGAAGTTGAGACTGCTATCACTGTAATATGCCAGGATTTTATAATGGAACTCCAAAGGAAAAAGACCACATCAGAGCTTACCAAGATAAAGTGTTTCCTAATTGGCGCAAGGGAACTGCCACCTCCGTCGACTATAGGTTCTTCAAGCGTCTATGTGATGCTCAGACCAGATAAGAAACTCTATGTAGGAGAGACGGATAATCTCGAGGATCGGGTTTGTGCACATCGATCAAAGGAAGGAATGCGCGATGCATCGTTCCTTTATTTTCTAGTTCCTGGAAAAAGCGTGGCATGCCAAATAGAAACACTGCTCATCAACCAGCTTCCTAATCGAGGCTTCCAACTAAGCAACATAGCTGATGGTAAGCATCGGAATTTCGGCACATCCAACCTTTATGTGTAACTAACTACATACGATAAATATTGACAATCTTTACCTCCAAAAGTATTATTTTGGACGGTTATATACAACTAATGACTCCTTTAATCATCTTTACGTTTTATTGATGAAGTTTAGGAAGCAGTGTCTGCAGCATTTTTGTTAGAATTAGCAGCTGCAGCTGCATTTATGTCCACATATGCAAATGTGGAAATTTTTTGTATTAGCTNGCAAGTACAGATTAGTCAGTGTTCTATTCTTTCAAGAGTGTCTTTTATGGTCTATGGACACTTCTTCCTCGTCCAAAATACTTAAAATATCTTAGAATTTGTGGGTCTAATTCATCCATACAAAACCAACTTGTAAGATGAGGATTGNCCAAGCTTTGTAAGCACTACATTAGCTATATCACTAATCGACGTGAGACTCTCAACATGGTATTCCCTAACACACCTTTTTATCACCCAAC

Protein Sequence

>Glyur000781s00024259.1
MLLSNKIPRCERVAGNHLAXPCVCVWGFKRRSRKPTKQKQHSSLHLNRTKQNKPIHRHLTMYRLATRNVVVCFPRSWRSLSSPFLHSPPPSTYISFFPSRFLRINGCLGNISSFKVGKASRGSGKVTKKLKELNNVLDDKDHSHILWWKERLQMCKKPSTVQLIERLDYTNLLGLDSKLKHGSLKEGTLNSEMLQFKSKFPRQVFLCRVGDFYEAFGIDACILVEYAGLNPFGGLQSDSIPRAGCPVVNLRQTLDDLTRNGYSVCIVEEVQGPTQARSRKRRFISGHAHPGNPYVYGLAGVDHDIDFPEPMPVVGISHSARGYCINMVLETMKTYSSEDCLTEEAVVTKLRTRQYHHLFLHTSLRRNSRGTSNWGEFGEGGLLWGECRSRHFEWFDGNPISDLLVKVKELYGLDNEVTFRNTTVSSGNRARSLTLGTSTQIGVIPTEGIPSLLKVLLSPKCNELPVMYVRDLLLNPPSYEIAFKIQATCKLMSSVTCSIPDFTCVSSAKIVKLLEWKEANHIELCRIKNVLDEILHMYRTPELNEILKHLIDPTWVATGLEIDFKTLVTGCEVASGKIGEIISQDGEKDQKFSSFSDIPNEFFEDMESVWKCRIKTIHIDDVLTAVEKAAKALHLAVTEDFTPVVSKIKTSMAPLKAPKGEISYAREHEAVWFKGKCFVPNLWTGTPGEEQIKQLKHALDSKGRKVGEEWFTTLKVEDALTRYHEANGKAKARVLELIRGLATELQSHINILVFSSTLLVIAKALYAHVSEGRRRKWIFPTVVESQGSEDVKLLDKNHGMKIVGLLPYWFNIAEGGAVRNTVDMKSLFLLTGPNGGGKSSILRSICAAALLGICGFMVPAESALIPYFDSIMLHMKSYDSPADQKSSFQVEMSELRSIISGTTKRSLVLVDEICRGTETAKGTCIAGSIIETLDKIGCLGIVSTHLHGIFTLPLNINXTVYKAMGTTCIDGQTKPTWKLTDGVCKESLAFETAKREGIPETIINRAEDLYLSVFAKKLLSEENFTKQEEFSTYINVNSFNGTNLHSKKFISGASHGGIALANQMEVLHKEVETAITVICQDFIMELQRKKTTSELTKIKCFLIGARELPPPSTIGSSSVYVMLRPDKKLYVGETDNLEDRVCAHRSKEGMRDASFLYFLVPGKSVACQIETLLINQLPNRGFQLSNIADGKHRNFGTSNLYV

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00781	19608	39271	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006298 mismatch repair

molecular_function

GO:0005524 ATP binding

GO:0030983 mismatched DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000781s00024259.1	PF01624.15	MutS_I	193	292	6.80E-13
Glyur000781s00024259.1	PF00488.16	MutS_V	823	1009	2.20E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.513
SRR1783600	control	1.524
SRR1783602	moderate drought stress	0.893
SRR1811619	moderate drought stress	0.893

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.720
DRR006520	Root Summer glycyrrhizin high producing strain	1.779
DRR006521	Root Winter glycyrrhizin high producing strain	3.288
DRR006522	Root Winter glycyrrhizin high producing strain	2.888
DRR006523	Root Summer glycyrrhizin low producing strain	1.204
DRR006524	Root Summer glycyrrhizin low producing strain	1.229
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.735
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.816

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.931
SRR2868004	Drought Stress (root)	3.046
SRR2967015	Control (root)	2.770

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.511
SRR9715740	Leaf	6.708
SRR9715741	Leaf	3.582
SRR9715739	Root	0.520
SRR9715742	Root	1.887
SRR9715743	Root	1.153

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.811
SRR8749028	MeJA induced 9h	1.632
SRR8749029	MeJA induced 9h	1.308
SRR8749030	Uninduced	0.201
SRR8749031	Uninduced	0.159
SRR8749032	Uninduced	0.098

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.645
SRR8400027	Control - Root	4.293