Gene detail

Gene detail information of Glyur000779s00022851.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10250.1	7.00E-119	Phototropic-responsive NPH3 family protein
NR	KEH20836.1	0	phototropic-responsive NPH3 family protein [Medicago truncatula]
Swissprot	tr\|Q9LFU0\|DOT3_ARATH	7.00E-146	BTB/POZ domain-containing protein DOT3
trEMBL	tr\|A0A072TUJ7\|A0A072TUJ7_MEDTR	0	Phototropic-responsive NPH3 family protein {ECO:0000313\|EMBL:KEH20836.1}

Sequence

Transcript Sequence

>Glyur000779s00022851.1
ATGAAGTCTCTTCAAGTGGCCCAAGCACCAGACCCTGAAAGTCAGACTGGCAGAATTGATCAAGTTTCAGATAAAAGCATTGTAATTCCCAACAAACTCGTCACAATAGCTGATAGCATCAAAGGCGAACAAGCATGGTTCATTTCTCCTCAAATCCCAACAGACTTTTCAATTGAAGTCCAGGAAACCACTTATAATGTACACAAGTACCCCTTGATATCAAAATGCGGCTACATAGGACGTTTGGAAGTTCAGCCTTTGATCTCAAATTCTGGCAATGTGCTCAAGCTTGAAAACTTTCCAGGTGGATCTGAAACATTTGAAACAATTCTAAAGTTCTGTTATGGCCTCCCTATAGACTTCGACTCAAATAATATNGCTGCATTAAGATGTGCATCAGAATTCCTAGAGATGACTGAAGAACTAGAAGATGGAAATCTCATTTCCAAGACCGAAGCTTTCCTCACATTCGTCGTGCTTTCTTCATGGAAAGACACTCTCACTGTTCTGAGATCTTGTGAAAATCTCTCTCCATGGGTTGAGAACCTCCAAATTGTTAGAAGATGCTGTGATTCTATAGCCTGGAAGGCTTCTAAAAATGAGCACACAAGTGAGGATGCAGCAGCTAATCAAGAAAGCTGGTGGTTCAATGATGTGGCCACCTTCCGCATCGATCATTTTATGCGGATCATTTCAGCAATAAGGGCAAAAGGAACCAAGCCTGAGATCATTGGTAAATGTATCATGCAATATGCCAAGAGATGGCTACCAGGGATGGATGTGGAGTTGGAAGGGCTAAGAGGATATGGGCATGGAAAAAGTAATCTTCAGTTCAGTATTTTTAGTGGGAAGAAAAAAGAAAGCACTGGGCACAGCAAGGAGCAAAAGGCTATTATTGAAAGCCTAGTAAGCATAATTCCTCCGCAACAAGAAGCTGTCCCATGTAAGTTCTTGTTGCAGATATTAAAGATGGCCATGATGTATTCTGTATCTCCAGCTCTCATTTCAGACCTTGAAAAGAGAGTGGGCATGGTCATGACCAATTCAACCGAAGACTGCACTATGCAAGACATAAATGTAGTGCAACGAATTGTTGAACACTTCTTGATGCATGAACAACAGCAACTGCAACTGCAACAAAAGTCCGGGAAATTCAATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00779	116783	119214	+

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000779s00022851.1	PF03000.9	NPH3	213	376	1.60E-38

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.189
SRR1783600	control	0.150
SRR1783602	moderate drought stress	0.185
SRR1811619	moderate drought stress	0.146

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.260
DRR006520	Root Summer glycyrrhizin high producing strain	0.180
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.113
DRR006524	Root Summer glycyrrhizin low producing strain	0.142
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.822
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.778

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.334
SRR2868004	Drought Stress (root)	0.424
SRR2967015	Control (root)	0.229

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.583
SRR9715740	Leaf	4.451
SRR9715741	Leaf	3.174
SRR9715739	Root	0.000
SRR9715742	Root	0.133
SRR9715743	Root	0.106

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.354
SRR8749028	MeJA induced 9h	3.295
SRR8749029	MeJA induced 9h	2.446
SRR8749030	Uninduced	2.121
SRR8749031	Uninduced	0.928
SRR8749032	Uninduced	2.087

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.071
SRR8400027	Control - Root	0.458