Gene detail

Gene detail information of Glyur000779s00022849

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10260.1	3.00E-111	RAB GTPase homolog H1E
NR	XP_003525055.1	2.38E-150	PREDICTED: ras-related protein RABH1e-like [Glycine max]
COG	YP_004465499.1	2.00E-20	small GTP-binding protein [Alteromonas sp. SN2]
Swissprot	tr\|Q9LFT9\|RAH1E_ARATH	3.00E-141	Ras-related protein RABH1e
trEMBL	tr\|I1K4J2\|I1K4J2_SOYBN	9.00E-151	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G31200.1}

Sequence

Transcript Sequence

>Glyur000779s00022849.1
GTGGTGCATTTGGTCATCGTTCATTTCATTTCGTCCCTTTCCTCGTTCTCGCTCTTTCTCTCTCTGNATTCGCTGCGAGAAGAAAATTTGAGAGATTCAGATCTACGTTTCTGAGAGAGAAGAAAGGATTTAATTTCTCAGAAAATGGCGACGGTGTCCCCTCTCGCCAAATACAAGCTCGTCTTCTTGGGCGATCAATCGGTTGGAAAAACCAGCATCATCACCCGCTTCATGTACGACAAATTCGACACCACCTATCAGGCCACTATTGGTATTGACTTTTTGTCAAAAACAATGTACCTTGAAGATAGAACTGTTCGTTTGCAGCTTTGGGATACTGCAGGGCAAGAAAGATTTAGAAGTCTCATTCCAAGCTACATAAGAGATTCTTCTGTTGCNGTTATTGTATACGATGTGGCTAACAGGCAATCATTTTTGAACACTAACAAGTGGGTTGAGGAGGTACGTACAGAACGTGGCAGTGATGTTATCATTGTCTTGGTTGGAAACAAAACCGATCTTGTTGATAAAAGGCAAGTTTCTATAGAGGAAGGAGATGCCAAGTCTCGTGAGTTCGGAATCATGTTTATAGAAACCAGTGCAAAAGCAGGCTTCAATATCAAGCCTTTGTTTCGTAAGATTGCTGCTGCCTTGCCAGGGATGGAAACTCTTTCTTCTACAAAACAGGAGGACATGGTCGACGTAAATTTAAAACCCACGGTGAATTCATCCCAGACAGAGCAGCAGGGAGGAGGTTGCTCATGCTAGAGAAGACTATTCTCCAAAGAGCCAACAGATATCTGTTCCCTCAGTATAATACTGGGAATGGCTGCTTAAATGCAAGAATGATGCTGGAGGAAACGTGCTTTCATATCAATGATCCTTCAGTTTATTTGGTGAGGATGACAAATTGCAGTAATGGTTTTGATGTATGACATAAAGATTGATAGTTATTTTTTATTTGTTAGTCCCTTGATGTAAGAATACAGGTAATAAACAAGTTCCTCTAAAATGTCTCTCCTCCTAGGTATATGTTGTCCTTTTTTTCCCCGGTTTTTTTTTAGGTCAANTTTTTTTCCCGGTTAAATATGTTATCCTTGAACATATGCATGGATGTACAAGGCCAGAAATATATAACCCTTCATCCGACCCCCTTTCTTTGGGGCACCCATATGACCTATATATCAAAAGCAGAGTTGCCACGAATATCTTCGTGGGTTTGGTTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00779	109212	112383	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006886 intracellular protein transport

GO:0006913 nucleocytoplasmic transport

GO:0007165 signal transduction

GO:0007264 small GTPase mediated signal transduction

GO:0015031 protein transport

cellular_component

GO:0005622 intracellular

GO:0016020 membrane

molecular_function

GO:0003924 GTPase activity

GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000779s00022849.1	PF00071.17	Ras	11	169	2.90E-57

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	24.642
SRR1783600	control	24.692
SRR1783602	moderate drought stress	14.457
SRR1811619	moderate drought stress	14.421

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.957
DRR006520	Root Summer glycyrrhizin high producing strain	29.887
DRR006521	Root Winter glycyrrhizin high producing strain	28.745
DRR006522	Root Winter glycyrrhizin high producing strain	27.582
DRR006523	Root Summer glycyrrhizin low producing strain	69.730
DRR006524	Root Summer glycyrrhizin low producing strain	69.533
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.598
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.272

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.226
SRR2868004	Drought Stress (root)	5.831
SRR2967015	Control (root)	3.231

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	50.025
SRR9715740	Leaf	33.127
SRR9715741	Leaf	50.293
SRR9715739	Root	41.287
SRR9715742	Root	48.290
SRR9715743	Root	43.955

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	90.690
SRR8749028	MeJA induced 9h	81.732
SRR8749029	MeJA induced 9h	143.309
SRR8749030	Uninduced	152.004
SRR8749031	Uninduced	206.834
SRR8749032	Uninduced	196.993

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.791
SRR8400027	Control - Root	20.222