Gene detail

Gene detail information of Glyur000779s00022845

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22300.2	4.00E-170	signal responsive 1
NR	XP_007159660.1	0	hypothetical protein PHAVU_002G256500g [Phaseolus vulgaris]
COG	YP_001975179.1	2.00E-06	ankyrin repeat domain protein [Wolbachia endosymbiont of Culex quinquefasciatus Pel]
Swissprot	tr\|Q8GSA7\|CMTA3_ARATH	0	Calmodulin-binding transcription activator 3
trEMBL	tr\|A0A072TTJ2\|A0A072TTJ2_MEDTR	0	Calmodulin-binding transcription activator {ECO:0000313\|EMBL:KEH20829.1}

Sequence

Transcript Sequence

>Glyur000779s00022845.1
CACCAACAACACTCTCTCTCCGCGTTAAACTAAAACACACTTGAACTTTCTTACGTTCCATCCATTGCATTACAACAACATCGCAAACTCTCTCTCTGGCCATCTCTTTCTATTCCTATTTTTATTTTGTTTGATTAGATTTAGAAGGAGAGTCCCTTTGTCTGTCGAAACCGAATGCTTGTGTCGTGTCCCTCAAAACAACGAACTGCTTCACTAGCTGCTTCCAACACTATAGTATCAGCTGCTTCAGCACAAACTCAACGATCCTCTAAAAACATTCACTTTCTCATATGGCAGCTGAGATTAACAGGCGCTGCGTTCACCCCAATCAATTGGGTTAGCTTTCCTTCACTTCAATTTCTTTTCATAAGATNCTTTTTCACCATTGATTTTCAAATACGATATCTGCTACTGTTGGGGTCATAACATCATTATGACATTCCCCAAATTGAATTCAAACTCTGTAAAGCCTTTTTTCCCCCTTTCAATCACAAAAAAAAAATAAAATTGCTTTTTATTCAAAAATAATATATTTTTCATCACTTCAGAATTCAGATGATGGAGAGTGGCCTGTGTGTTAAGTTTTGATGTTACTGGTCACTGCATGTTTAAGCTTGGTTTGAGTCATGTCTACCTACTCNGAATTTCCTTTCTTGTTTCCTAATTAAAGCTTGGCTGACTTNGTGGATGTTTGGATACACGGTGGAGATATCCAGAATTGATTTTACCTTCGTCAAAAGTGATTTTAGTAAAAATTTAGGTGTTTGGGTTTTTGAAGAGGAAACAATTTTGTTGCCCAAAATTGATTCTACCTNAAGCAAGGATNTGTAGCTTTTGCATTAAGCAACCAGTAGAGAAGCATTCTTGTTAGTGATGACAACAAACTTACATTGATATCTTAAGTNGCCCACAGTCACATATATTGGTATGCTTCGGTTCAGAGAAATCCAATCTCTTTTGTGTTTCACATTTCCTCAACATATTATATAACTATATATAGACTAAAANTTTTCAACTTTGCCCCCTTTCTTCTCCTCCTTCATTTGCCTTGGTTAGGGAAGCAGTAATGTACAATTGTTATTGATTATATCTGTCTTAAAATGTCCTCGTGTGTGTCTGAGATACGTTACTTAGGCCTAGTTTAAGGATTTCATGTAAGCAATCTAGTTGGCAAATGATGTTTACATGTGCGTGTTATAAAATTGTTAGTTTCAGAGACCAATTTGTATAGCATGCAAAACTGAAAAACATTACATTGTCAACAAAATTGTATGTTAACTCTTAAACCTCTCTGTTTAAATATCTGATTGCTTTACTACTATATGAGGGACAGATATTGAGCAAATTGTTTTAGAAGCACAGAATCGATGGCTACGTCCAGCTGAAATCTGCGAAATTCTCAGTAATCATAACAAGTTTCGAATTGCTCCGGAACCTGCATACATGCCTCCAAGTGGTTCACTCTTCCTATTTGATCGGAAGGTGATGAGATACTTTAGAAAGGATGGCCATAACTGGAGGAAGAAAAAAGATGGAAAAACAGTGAGGGAAGCTCATGAGAGACTCAAGGCTGGAAGTGTGGATGTATTGCACTGCTACTATGCCCATGGAGAAGAAAATGAAAATTTTCAAAGGCGCACTTACTGGATGCTTGAGGAGGCTTCTCTTCTCACTCTTTTCATTCAACATTGTTTCAGGGAACTCTCACACATTGTTCTTGTCCACTATCGGGAGGTGAAGGATCTCTACTCTTTTCTTGAGCTGCACCACCCTGCTGTTGAGAAGATCAAAGCACAACTCACTGATTCGCACTGTCCTCTGCCGCTCAAAGATGGTCAAGAAAAGTTACCTGTCATTGCTGGGGTGAATTATATCCCACTCAGTCAAGCTAATAAAGCCGAAGATATTAATAATGTTGGACTGACATATGAGACCTCAAAACTCCTTGGCTTTTCGTCATGGGAAGACATCTTAGAAAATAATGGAGATGAGATAATGGGGCAATATTTGAATGGAAGTCTTACACAAGCTGAAGGAAATTGGCAGGCTGCTGGTTTTAATTCTTTAAGCACATCCAATTGGCCCATAGATAGGATGTATTCAGGCTCAACATGTGAGGCTAGTTATAGCAACTGTGAGCAGGAAGTTGATGAAGTTGATATTCAAAATTCCTTGGAACAGTTTCTTCTTCATCCACACAAACAACACAAGGGCCTAAAGAAGCTTGACAGTTTCAACCAATGGATGAGTAAAGAACTAGGAGATGTGGAAGAATCTAACAAGCAATCCACTTCTGGCACTTATTGGGATACAGTTGAAAGCGAAAATGGAGTTGGCAGTACAACTATTCCTTCCCAAGTGCACCTGGACACCTATGTACTGGATCCATCTATTTCCCATGATCAGCTTTTTAGCATTATTGATTATTCCCCAAGCTGGACATTTGAAGGCTCAGAAATTAAGGTTATCATATCAGGACAATTCTTAAGGAGTCAACATGAAGCAGAACATTGTAAATGGTCATGCATGTTTGGTGAAGTAGAAGTGCCAGCAGAGATAATTGGGAATGGTGTTCTTTGTTGTCATACTCCTCCACACAAGGCTGGCAGGGTTCCTTTCTATGTAACCCGTTCCAATAGGTTAGCATGTAGTGAAGTGAGGGAGTTTGATTTCCAAAACAGAGGCAGCAGCACTTTTGATACTTTTAGCATACGATTTGGAGAACTGTTGTCCCTTGAGAATCCCTTCCCTCAGAGTTTTGATTCAATTGGTAGTTTGAGTGAGAGATCTGAACTGAGAGGTAAAATCAGTTCTTTGCTGAGGAGGGAGGATGATGAATGGGACAAGCTGCTGAAACTTACTCTAGAGAAAGACTTTTCTCCAGAACTTGGTGGCCAAGGTGTGCTTCATTTCGCGGCTGCACTTGGCTATGATTGGGCCTTAGAACCCACCATAGTTGCCGGTGTGAATGTGAACTTTCGTGATGTAAATGGATGGACTGCTCTTCATTGGGCAGCATTTTGCGGCAGGGAGCGCACCGTTGCTTCCCTCATCTCTCTTGGCGCGGCACCAGGAGCGCTGACCGATCCATGCCCAGAGCATCCCTCCGGTAGAACACCATCCGACCTAGCTTCGGCAAATGGACACAAAGGAATTGCAGGGTATCTCGCAGAGTCTTTCCTACGTGCACAACTCAAGTCACTTGATTTGAACAGGAATGAGGGAGAAAGCCTTGGAGCAAAAGCAACACAAAGAGTCCAAGAACAGAACACTGCTCAAAGAAAACAGCTCAAGGAATACGGTGATGATGAACATGCTCATGCTGCTCTTTCACTTGCAGCACTGAATCCTGTCCATGTTGCCGCAACACGAATCCAGAACAAGTTCCGCGGTTGGAAGGGCAGAAAAGAGTTTTTGATGCTTAGACAACGAGTCGTAAAAATTCAGGCTCACGTGAGAGGTCACCAGGTTAGGAAGAACTATGGGAAGATAATTTGGTCGGTTGGAATATTGGAAAAGGTTATTTTACGTTGGCGTCGAAAAGGGAGTGGTTTGCGAGGATTTAAATCAGAGGCCATTCCTGAGGCTGAGGGAACAACCATGGTACAAGGTGGTAGTGTGTCTTCCGCCGCGGAGGATGACTATGATTTCTTGAAAGAAGGAAGGAAGCAAACGGAGAAAAGGTTGGAGAAGGCACTGGATAGGGTGAAGTCAATGGTTCAGTATCCAGAGGCAAGAGACCAATACCACAGGCTGTTGAATGTTGTAACTGAAATCCAAGAAAATCAGGTAAAACAAGATGTGATTACTAAGAACTCCGAAGAAACGGGAGAATTTGATAACCTCGTTGATCTTGAAGCATTGTTGGACGACGATGTTTTCATGCCTACAGCCACCTAGAAGTTAGCTTCCATCTGTTCCATTGTTCATTTTGTATGGGTTAGCACTTGTATTTTGATCGTTATAGTAATCTCGATTTACATCACTTGTATTTAGCAGGAAATTAAAGGGTCATTAATTTACTAACATTTTACAGGAAAAAAAAAAGCGTAAACTCTAAAATCATATAGTACAAAATAATACGCTTCAGATCTCCCTGTCAAATGCAGAAATGTCAGAAACTTGAGTGCTCTTTAGTCAATACAAAATGCTTTAATCAAATTGTGAAGCCAGTTTTTCAGTGCATACTTCAGTGCCATTAGGAACTAAGGTAGGGTTCACGATGAGATTAAAACTTCGGCACCATTGTAACAGACCTAATTCTAGAGCTCTTATCAAACTGCAAATATAAAATAATAATCCACCTTGAGTAACGAGCATTTTACAATTCATTGTGTTTCTAACGTTGGTTGAACATTTGCAACCATGAATACACATCGTCGGCGAAATTTCCACCCATATATATACTGCTCTTATTGTGAGAAAGAAGGAAAAAAAAAAGGACAATGCTAAAACCATCCACTGTACATGCCAACCACCTAAGTATACATTTCCATAACCCATGTGCCCTGAAGGATGTAACGGCTCCCCCAACGGGTTGAATAAAGGGAAAACGGTAGAAAGGAAAATAAATACAGAAAGTAGATGATAAAGATAAGGCCAAATGATGATTTGAGTACCTAGGAAGTTATGGAACTCCTCCGCCTAGTTCCGGTTACCGAGGCCAAGGCTCTCATAGAACAAAATGTACCCATGGTCTGTATTACTTGAATATTCCTGTGCTGATCCAAAGAACGTCTGCACAGCAGACTCATCAATCATCTCAACATTTTCGTCATCAAAAAATAACCAGTGGTTATGGCTTTTCACAAGGCTGACATAATGCCCATGGTTGGGCCCACTCCCAACATGGACAACTACTGCAAATAGAGAATACTCAACATCTGCGTCTTCAACAGTGTTACTCAACTTCAGCTCAAGGGGGAAAACAACCCGGTAAGACAGCTTCTTGTAGCGGCCCAGCTGCTCCATGTATTTAAACCGCTTAAGATGAATGACCAAAATCTGAGGCGGTTTCTTTATCTTCATCCTCTTCTGGGCTTCTTGCAAACTAATATCATAAGAAAGTTCACATCTTGGTCATCAGTCTGGTAAATGGACATGAAAAACAGAGGGAAGAAAGTGCATATATATATTTTTCCAGAGTTCTCTACATATTTTTACACGCCAAAATGATATGGCCATGAAATCCCGTTCAGATAACATAAGAACGTCAATCCATNGAAAAATGAACATATTTTGGTTTGCCTATCGTAAATAAACATGAATTGCATTATATTTTTCTGTTAAAAGGAGATGAAAATTTCCATAAATCAATACATGATATTCAAACTATTCGACATCTATGCTTCACCACAAACAATTTATTTCACTCCAGTTAAAAGGAGTAGAAGAGAGGCTTGACATCAATTAAAATCCATTTACCAACTTCACCTAATGGGCTAAGGCTTGATTGTTACAAGCAGCAGAATCATTCAGCTAAGCACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00779	89648	99197	-

Gene family

Gene family	subfamily
Transcription Factors Family	CAMTA

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000779s00022845.1	PF03859.11	CG-1	2	74	2.30E-37
Glyur000779s00022845.1	PF01833.19	TIG	325	402	0.00025
Glyur000779s00022845.1	PF12796.2	Ank_2	468	543	1.50E-08
Glyur000779s00022845.1	PF00612.22	IQ	639	657	0.0057
Glyur000779s00022845.1	PF00612.22	IQ	663	680	0.00014

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.642
SRR1783600	control	3.509
SRR1783602	moderate drought stress	1.551
SRR1811619	moderate drought stress	1.516

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.224
DRR006520	Root Summer glycyrrhizin high producing strain	7.081
DRR006521	Root Winter glycyrrhizin high producing strain	3.536
DRR006522	Root Winter glycyrrhizin high producing strain	3.423
DRR006523	Root Summer glycyrrhizin low producing strain	37.256
DRR006524	Root Summer glycyrrhizin low producing strain	37.405
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.136
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.053

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.728
SRR2868004	Drought Stress (root)	15.387
SRR2967015	Control (root)	8.077

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	26.453
SRR9715740	Leaf	19.732
SRR9715741	Leaf	31.920
SRR9715739	Root	3.979
SRR9715742	Root	19.753
SRR9715743	Root	16.669

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.149
SRR8749028	MeJA induced 9h	34.229
SRR8749029	MeJA induced 9h	40.094
SRR8749030	Uninduced	32.423
SRR8749031	Uninduced	20.029
SRR8749032	Uninduced	19.512

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.226
SRR8400027	Control - Root	9.564