Gene detail

Gene detail information of Glyur000779s00022844.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22310.1	7.00E-153	ubiquitin-specific protease 4
NR	XP_006580272.1	0	PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform X2 [Glycine max]
Swissprot	tr\|Q8LAM0\|UBP4_ARATH	0	Ubiquitin carboxyl-terminal hydrolase 4
trEMBL	tr\|I1K4J0\|I1K4J0_SOYBN	0	Ubiquitin carboxyl-terminal hydrolase {ECO:0000256\|RuleBase:RU004435}

Sequence

Transcript Sequence

>Glyur000779s00022844.1
GGCGGACATAAAACCGCTCTTTATTTNTGTTCTCAGATTTTCTTCAAAATTTCCGTCCGCATTTTCATCGTCCTCCCTTCTCTCTCTCTCTCTCGAACGAAACCCTTGTTCCATTCCCTGCGATTATATCCATAGAAAAAACCAGTAACCTTAGAAGATTCACTCTGTAACAAAGCCCAACGATCCAAACGTCCTTTGAGCATTTCATGGTGCGAGTCACTGAGTTGAATCGGATAGGAATCTGAGTTTGCTGGTGTTCGGTTTACGCGCTGATGGGTGCTGCGGGCTCCAAGCTTGAGAAGGCTCTTGGGGACCAATTCCCCGAAGGAGAGCGTTACTTTGGCCTTGAGAATTTCGGCAACACTTGTTATTGCAACAGCGTTTTGCAGATAAGTTCGCAGAAGAAGAAAACTGGTGTCATTGCTCCTAAACGTTTTGTACAGAGGTTAAAGAAACAGAATGAACTCTTCCGTAGCTATATGCACCAGAAAGAGGCTCAGGATGCGAAAACTGATACAGAGACGTCACCTCCTTCTGAAAAGGTTGCAAATGGGCTCAAGAATGGTCACGTTAATGGTGCTAAGAAAGAGCCTTTAGTTACTTGGGTACACAAAAATTTTCAGGGAATACTCACCAATGAGACGAGGTGCTTGCAATGTGAAACGGTGACAGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAAAACAGTTCAATTACAAGCTGTTTGAAAAACTTCAGTTCCACTGAGACGTTGAATGCTGAAGACAAATTTTTTTGTGACAAATGCTGCAGATGTGAACTTTCTTATGATATTAGTTTGCAAGAAGCCCAGAAGAGGATGAAGATAAAGAAACCGCCTCAGATTTTGGTCATTCATCTTAAGCGGTTTAAATACATGGAGCAGCTGGGCCGCTACAAGAAGCTGTCTTACCGGGTTGTTTTCCCCCTTGAGCTGAAGTTGAGTAACACTGTTGAAGACGCAGATGTTGAGTATTCTCTATTTGCAGTAGTTGTCCATGTTGGGAGTGGGCCCAACCATGGGCATTATGTCAGCCTTGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTTGAGATGATTGATGAGTCTGCTGTGCAGACGTTCTTTGGATCAGCACAGGAATATTCAAGTAATACAGACCATGGGTACATTTTGTTCTATGAGAGCCTTGGCCTCGGTAACCGGAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00779	85784	90490	+

Gene family

Gene family	subfamily
Ubiquitin Family	USP

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006511 ubiquitin-dependent protein catabolic process

molecular_function
GO:0036459 thiol-dependent ubiquitinyl hydrolase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000779s00022844.1	PF00443.24	UCH	40	311	7.20E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.060
SRR1783600	control	9.278
SRR1783602	moderate drought stress	7.549
SRR1811619	moderate drought stress	7.703

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.929
DRR006520	Root Summer glycyrrhizin high producing strain	14.296
DRR006521	Root Winter glycyrrhizin high producing strain	16.200
DRR006522	Root Winter glycyrrhizin high producing strain	14.687
DRR006523	Root Summer glycyrrhizin low producing strain	18.309
DRR006524	Root Summer glycyrrhizin low producing strain	18.265
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.722
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.835

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.130
SRR2868004	Drought Stress (root)	20.782
SRR2967015	Control (root)	21.211

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.614
SRR9715740	Leaf	21.015
SRR9715741	Leaf	21.175
SRR9715739	Root	7.058
SRR9715742	Root	14.718
SRR9715743	Root	12.893

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.089
SRR8749028	MeJA induced 9h	16.519
SRR8749029	MeJA induced 9h	13.429
SRR8749030	Uninduced	13.008
SRR8749031	Uninduced	21.296
SRR8749032	Uninduced	20.210

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.225
SRR8400027	Control - Root	22.969