Gene detail information of Glyur000779s00022838 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G22890.1 | 2.00E-48 | C2H2 and C2HC zinc fingers superfamily protein |
| NR | XP_004504082.1 | 9.36E-119 | PREDICTED: zinc finger protein STOP1 homolog [Cicer arietinum] |
| Swissprot | tr|Q943I6|STOP1_ORYSJ | 9.00E-56 | Zinc finger protein STOP1 homolog |
| trEMBL | tr|V7CQP4|V7CQP4_PHAVU | 2.00E-115 | Uncharacterized protein {ECO:0000313|EMBL:ESW31658.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00779 | 67368 | 68261 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000779s00022838.1 | PF00096.21 | zf-C2H2 | 113 | 135 | 1.70E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.406 |
| SRR1783600 | control | 0.371 |
| SRR1783602 | moderate drought stress | 0.493 |
| SRR1811619 | moderate drought stress | 0.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.347 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.214 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.872 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.811 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.717 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.562 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.116 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.919 |
| SRR2868004 | Drought Stress (root) | 8.132 |
| SRR2967015 | Control (root) | 6.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.917 |
| SRR9715740 | Leaf | 2.541 |
| SRR9715741 | Leaf | 19.551 |
| SRR9715739 | Root | 3.888 |
| SRR9715742 | Root | 2.386 |
| SRR9715743 | Root | 3.515 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.422 |
| SRR8749028 | MeJA induced 9h | 18.765 |
| SRR8749029 | MeJA induced 9h | 28.816 |
| SRR8749030 | Uninduced | 13.206 |
| SRR8749031 | Uninduced | 8.137 |
| SRR8749032 | Uninduced | 29.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.494 |
| SRR8400027 | Control - Root | 1.615 |