Gene detail

Gene detail information of Glyur000779s00022837.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G10290.1	0	leucine-rich repeat transmembrane protein kinase family protein
NR	XP_003525052.1	0	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290-like isoform X1 [Glycine max]
COG	YP_007319008.1	2.00E-19	hypothetical protein FAES_0403 [Fibrella aestuarina BUZ 2]
Swissprot	tr\|C0LGT1\|Y5129_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At5g10290 (Precursor)
trEMBL	tr\|K7KQX3\|K7KQX3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G31120.3}

Sequence

Transcript Sequence

>Glyur000779s00022837.1
GCCAGATTTGGTGTCATACCATACCACCACCACTTTCGGCCATTCTGCCAGCTATCTATCTAATGTATATTATCATCGATGGGGATTGTTCGTGCTCTATTTGATTATCACGGTTGTTGTGTCAGTTGTTGATGCCGGTAGATATGGACATCTTATTTGTGCTACTGCTATTGGGTTGCTTATGTTCTTTTGTGTTGCCTGATCCGCAAGGAGATGCACTATATGCATTGAAAATGTCGCTGAATGCTTCAGCTAATCAGCTTACTGACTGGAATCAAAATCAAGTGAATCCTTGCACTTGGTCACGTGTTGAATGTGATAAGGACAACATTAATGTTGTTCAAGTTTCACTAGCATTGATGGGATTCACAGGACACTTGACCCCAAGATTAGGAGTTCTAAAATATCTTACAACTCTTTCTTTGCAAGGGAATGGCATCACTGGTGAAATACCAAAAGAGTTAGGAAACCTGACAAGCTTGGTCAGGTTGGATTTGGAAAACAACAAGTTAACTGGTGAAATACCATTTTCCCTCGGTAATCTTAAAAAACTCCAATTCTTGACATTGAGTCAAAACAATCTGAGTGGGACTATTCCTGAATCACTTGGCAGTCTCCCAGGCTTGATCAATATTCTGCTAGATTCAAATAATCTTAGTGGCCAAATTCCTGAGCAGCTATTTGAAGTTCCTAAATACAATTTCACTGGAAATAAGTTATATTGTGGTATGAATTATCGTCAACCTTGTGCATCTAATAATCCAGATCAAGATTCATCANACAAACCAAAAATTGGCCTCATGATTGGAATTATCATGGGGCTAGTCGCTATCCTTTTTATTGGTGGTCTGCTGTTCTTTTGGTGCAAGGGTAGACACAAGGGCTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTGCATTTGGTCAACTAAAAAGATTTGCATGGAGAGAACTACAGATAGCTACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGCGTTCTTGCTGATAACACAAAAGTTGCTGTGAAAAGGTTAACTGATTATGAAAGCCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGCGTAGCTGTGCATAGGAACCTGTTACGGCTGATTGGTTTTTGTACTACTCCAACTGAGCGCCTCTTAGTTTATCCCTTTATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAAACCTGGGGAACCTGTTTTGGATTGGCCGACAAGAAAACGAGTGGCTCTGGGAACCGCCCGTGGCCTAGAATACCTTCATGAGCATTGCAATCCTAAGATTATTCATCGGGACGTGAAGGCAGCTAATGTATTACTAGATGAAGATTTTGAGGCAGTTGTTGGCGACTTCGGTTTGGCAAAGTTAGTAGATGTTCGAAAGACTAATGTGACAACTCAATCTTCAGAAAGGACTGATGTTTTTGGTTATGGGATCATGCTTTTGGAGCTTGTTACAGGTCAGCGGGCAATTGATTTTTCACGTTTGGAAGAGGAAGATGATGTGCTATTGCTTGATCATCATGCTTGGAACTTTTATATGCTTCTTGGGTGGTTTGGTAAATGGTGTTGTCAACTTTGGCATTTTGTCAGTGATAAGGATTGGCCATCATGGGCGCTCCACCTAAAAAGGGTTAAGAAATTAGAACGAGAGAAAAGACTAGATGCTATTGTTGATCGCAACCTAAATAAAAATTACAACATGCAAGAGGTAGAAATGATGATACAAGTTGCATTACTCTGCACTCAAGCAACACCAGAGGACCGTCCACTAATGTCTGAGGTTGTAAGAATGCTAGAAGGAGAAGGGTTGGCTGAAAGGTGGGAGGAATGGCAGCATGTGGAGGTCAACCGCAGGCAAGAATATGAGAGATTACAAAGAAGATTTGACTGGGGAGAAGATTCGGTTTATAATCAAGATGCCATTGAATTGTCTGGTGGGAGATGAGAATATGTATAAATTTGAACCGTTTATATTATAGGCTGCACCTTGGGTCATTATCCTTTTTTGATAGGTTAGCTTGAATAGAGATGGAGTTTTAATTTTGTGGTATCTCAACTGTAAGAAAGGGGAAGAAGAGTTATAATTTTGATGTTACAATGATGCTTGTTGCATTGGGTTTTTTTCCAAGCAAAACAGGAATTCATTAAACAAAAAAAAAAGATGTGTGGTGAGCTTTTAGCAATGATCCCGTTACATGGATTTATACCAATTTCAAAACGTGTGCTATTGACCAAAAAAAAAACATGTGTGCTGCAAGTCCTTCAAACAATTATTGTTGTACATAAAAGGTTTTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00779	57671	65873	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000779s00022837.1	PF08263.7	LRRNT_2	24	63	1.20E-09
Glyur000779s00022837.1	PF12799.2	LRR_4	92	128	4.50E-09
Glyur000779s00022837.1	PF00560.28	LRR_1	140	162	0.099
Glyur000779s00022837.1	PF07714.12	Pkinase_Tyr	291	582	1.20E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.279
SRR1783600	control	19.330
SRR1783602	moderate drought stress	18.258
SRR1811619	moderate drought stress	18.166

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.231
DRR006520	Root Summer glycyrrhizin high producing strain	27.767
DRR006521	Root Winter glycyrrhizin high producing strain	28.887
DRR006522	Root Winter glycyrrhizin high producing strain	28.286
DRR006523	Root Summer glycyrrhizin low producing strain	31.690
DRR006524	Root Summer glycyrrhizin low producing strain	31.451
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.475
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.312

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	46.993
SRR2868004	Drought Stress (root)	48.248
SRR2967015	Control (root)	47.697

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	42.931
SRR9715740	Leaf	60.106
SRR9715741	Leaf	44.617
SRR9715739	Root	4.582
SRR9715742	Root	20.280
SRR9715743	Root	17.410

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	52.374
SRR8749028	MeJA induced 9h	34.837
SRR8749029	MeJA induced 9h	49.302
SRR8749030	Uninduced	34.119
SRR8749031	Uninduced	40.647
SRR8749032	Uninduced	40.366

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	31.765
SRR8400027	Control - Root	34.655