Gene detail

Gene detail information of Glyur000779s00022834

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G41560.1	0	autoinhibited Ca(2+)-ATPase, isoform 4
NR	AAL73984.1	0	type IIB calcium ATPase [Medicago truncatula]
COG	YP_004971639.1	2.00E-165	plasma-membrane calcium-translocating P-type ATPase [Desulfosporosinus orientis DSM 765]
Swissprot	tr\|O22218\|ACA4_ARATH	0	Calcium-transporting ATPase 4, plasma membrane-type
trEMBL	tr\|Q8W0V0\|Q8W0V0_MEDTR	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000779s00022834.1
ATTTTACACCCATAGAAATATAGAAATTTTTTCAGGCCGAAATTAAGTGGATTACTTGACAAAGCCATCATACACAGCCCTTTTATATATAACGCGCAATCGTACATTCGTTCGTACTGCGCTATCTTCTCCTTTTGTTTTGCTTCCCAGCATACTCTCCCTATGTGTACGACTACCACCACCACGGTTGTTCAAAATCTCCGCGGTTTCCGCCTCCGATTCCCACGTTGGCCTCTCTAACCTAACACTCTCAAAATCTCCCAATTCTATTTGTTTTATGTTTGGCTCTTCTATTCCTAGACTCTGNCCAATTAATCAATGGAGAAGCTGCTGAAGGATTTCGAACTCGAATCTAAGAATCCGTCCGTTGAAGCTCTCAGAAGATGGAGATCCGCCGTCACTCTCGTCAAGAACCACCGCAGACGCTTCCGTATGGTCGCCGATCTCGACAAGCGCTCCGAAGCTGAACAGATTAAACAGGGAATCAAGGAAAAAATTCGAATTGCTCTCTATGTTCAGAAGGCAGCATTGCAATTTATTGATGCTGGTAATCGAGTTGAATACAAGCTATCACAAGAGGCAACAGAAGCTGGTTTTGACATTCATCCAGATGAGATTGCTTCTATTGTTCGTGGCCAGGATCATAAAAACTTGAGTAATAAAGGTGGGGTTGAAGCCGTTGCAAGGAAACTGTTGGTTTCTGTGGATGAAGGTATCAGTGAAGCAAGTATAAACTGCAGACAACAGATCTATGGGGTCAACCGTTATACGGAGAAACCTTCAAGGTCGTTCCTGTTGTTTGTGTGGGAGGCACTGCAGGACTTAACTCTAATCATTCTCATGGTTTGTGCTGTAGTTTCTATAGGTATTGGAATTCCCACTGAAGGGTGGCCAAAGGGAACGTATGATGGTGTGGGAATCATACTCAGTATATTCTTGGTAGTCATTGTTACTGCTGTCAGTGACTACAAGCAATCCCTGCAGTTCATGGATTTGGACAAAGAGAAGAAAAAGATCTTTATTCAGGTCACCAGGGATGGAAAAAGAAAGAAGATANCAATTTATGATGTAGTAGTTGGTGATATTGTTCATTTGTCAACTGGGGATCAAGTTCCAGCTGATGGGNTTTATGTATCTGGATACTCTTTGCTTATTGATGAGTCGAGTTTGTCAGGTGAGAGCGAACCTGTAAATGTAAATAAAGAAAAACCTTTTCTTCTCTCAGGAACCAAAGTGCAGGATGGTCAGGGGAGGATGTTAGTAACGACCGTTGGCATGAGGACTGAATGGGGAAAATTGATGGAAACTATAAATGAGGGAGGAGAGGATGAGACCCCATTGCAGGTGAAATTGAATGGAGTTGCTACTATTATTGGTAAAATTGGTTTGACTTTTGCCATTGTGACATTTTTGGTGTTGGCTATAAGGTTTCTGGTCGAAAAAGCACTTCATGGTGAGTTTGCTAATTGGTCTTCAAATGATGCAATGAAGCTACTGGACTTCTTTGCTATTGCTGTAACCATAATAGTTGTTGCGGTTCCTGAAGGACTACCACTGGCTGTGACACTCAGTCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTTGTGAGGCATCTTTCTGCTTGTGAGACTATGGGTTCAGCNAGTTGCATTTGCACTGATAAGACAGGGACACTGACCACTAACCATATGGTGGTTAATAAAATATGGATATGCGAGAAAACCACCCAGGTGAAAGGTAATGAGAGTGCAGACGAACTGAAAACAAACACATCTGAAGGAGTTCTAAGCATCCTTTTGCAGGCTATATTTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAGATGGAAAGAACACAATATTGGGTACCCCAACAGAATCAGCATTATTAGAATTTGGCTTGCTTTTGGGTGCTGATTCTGACGCCCACAACCNTTGTAAAGCATATAAGATACTCAAGCTTGAGCCATTCAATTCGGTCAGGAAGAAGATGTCTGTGCTCGTGGGTCTTCCTGATGGAGGGGTCCAAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAATTATTGATTGCAATGGGGAAGTTGTTGATCTTCCTGCAGACCGCGCAAACAATGTCTCAGATGTTATTAATGGCTTTGCCTCAGAAGCTTTGAGAACCCTTTGTTTGGCTGTCAAAGATATAAATGAAACCCAAGGGGAAACCAACATTCCTGATAGTGGCTATACTCTTATAGCCATAGTTGGAATCAAGGATCCTGTACGCCCTGGGGTTAAGGAAGCCGTTCAAACTTGTTTAGACGCTGGAATAACTGTCCGCATGGTCACTGGTGATAACATAAATACAGCTAGAGCTATAGCTAAAGAATGTGGTATACTTACTGAGGATGGTTTAGCCATAGAGGGANCCAGTTTTCGTGATTTGTCTACGGAGCAAATGAAGGATGTCATACCCAGGATCCAGGTGATGGCACGATCCTTACCACTGGACAAGCATAAGTTAGTAACCAATTTGAGGAATTTGTTTGGCGAGGTTGTCGCTGTTACTGGCGATGGAACAAATGATGCTCCTGCATTGCATGAGGCAGACATTGGACTTGCCATGGGCATAGCTGGAACTGAGGTTGCCAAAGAAAATGCTGATGTCATTATAATGGATGATAACTTCACGACTATTGTCAATGTGGTCAAATGGGGACGGGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAATTAACAGTTAATGTTGTTGCTCTGGTTATCAACTTCGTTTCTGCATGCATCACTGGGTCTGCTCCACTCACAGCTGTTCAGTTGCTTTGGGTCAACTTGATTATGGACACTCTGGGTGCATTAGCCCTGGCNACCGAACCTCCTAACGATGGACTTTTGCAAAGACCCCCAGTTGCAAGNGGAGCAAGCTTTATCACCAAAACTATGTGGAGGAATATCATTGGTCAAAGTATTTATCAATTAATTGTACTCGCGATTCTAAATTTTGACGGGAAGAGGCTACTCNGAATTAGTGGTTCAGATGCAACTGAAGTGCTCAACACTTTGATATTCAACTCCTTCGTATTTTGCCAGGTATTTAATGAGATAAACAGCAGAGATATTGAAAAGATAAACATATTCAGAGGCATGTTTGAGAGCTGGATATTTTTGGCGATAATTTTCGCCACTGTGGCATTTCAAGTGGTGATAGTTGAATTCCTGGGAGCGTTTGCCAGCACTGTGCCTCTAAACTGGCAACTATGGTTACTCAGTGTTTTAATTGGATCAGTTAGCATGCCTATAGCTGCTATCCTCAAATGCATCCCNGTTGAAAGAAAACAACACCATGATGGTTATGAGGCACTTCCATCTGGTCCCGAGCTGGCATAAAACATTACAAGAGTATGGTTCTTCCTTTATTTTTGTCCACTGGTCCTGAATATTTCAAAATTTTAAGTTTGAAATAAAATTGAACATTGACAAGAACGTCTCTATCCAAGCTACTTTGAGACAACAACACATATGAACTGGACCGTTTGGCTTGTAATTCGAAGATCTCAATACGTGCAACACTGGTAGCGACGTTTGTCTTTGCCGATCAGGATGTAGGGATACCTTGAACATTATTGTTGATAAGTGCATTTTTGTAGTGTACAATAAAATTTTAGACATGTTTACC

Protein Sequence

>Glyur000779s00022834.1
MEKLLKDFELESKNPSVEALRRWRSAVTLVKNHRRRFRMVADLDKRSEAEQIKQGIKEKIRIALYVQKAALQFIDAGNRVEYKLSQEATEAGFDIHPDEIASIVRGQDHKNLSNKGGVEAVARKLLVSVDEGISEASINCRQQIYGVNRYTEKPSRSFLLFVWEALQDLTLIILMVCAVVSIGIGIPTEGWPKGTYDGVGIILSIFLVVIVTAVSDYKQSLQFMDLDKEKKKIFIQVTRDGKRKKIXIYDVVVGDIVHLSTGDQVPADGXYVSGYSLLIDESSLSGESEPVNVNKEKPFLLSGTKVQDGQGRMLVTTVGMRTEWGKLMETINEGGEDETPLQVKLNGVATIIGKIGLTFAIVTFLVLAIRFLVEKALHGEFANWSSNDAMKLLDFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICEKTTQVKGNESADELKTNTSEGVLSILLQAIFQNTSAEVVKDKDGKNTILGTPTESALLEFGLLLGADSDAHNXCKAYKILKLEPFNSVRKKMSVLVGLPDGGVQAFCKGASEIILKMCDKIIDCNGEVVDLPADRANNVSDVINGFASEALRTLCLAVKDINETQGETNIPDSGYTLIAIVGIKDPVRPGVKEAVQTCLDAGITVRMVTGDNINTARAIAKECGILTEDGLAIEGXSFRDLSTEQMKDVIPRIQVMARSLPLDKHKLVTNLRNLFGEVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVVKWGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLQRPPVAXGASFITKTMWRNIIGQSIYQLIVLAILNFDGKRLLXISGSDATEVLNTLIFNSFVFCQVFNEINSRDIEKINIFRGMFESWIFLAIIFATVAFQVVIVEFLGAFASTVPLNWQLWLLSVLIGSVSMPIAAILKCIPVERKQHHDGYEALPSGPELA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00779	33222	43622	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0070588 calcium ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0005388 calcium-transporting ATPase activity

GO:0005516 calmodulin binding

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000779s00022834.1	PF12515.3	CaATP_NAI	4	49	7.50E-20
Glyur000779s00022834.1	PF00690.21	Cation_ATPase_N	116	181	1.20E-13
Glyur000779s00022834.1	PF00122.15	E1-E2_ATPase	200	441	2.80E-64
Glyur000779s00022834.1	PF00702.21	Hydrolase	447	766	8.90E-24
Glyur000779s00022834.1	PF00689.16	Cation_ATPase_C	837	1010	9.70E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.137
SRR1783600	control	13.145
SRR1783602	moderate drought stress	10.206
SRR1811619	moderate drought stress	10.116

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.063
DRR006520	Root Summer glycyrrhizin high producing strain	11.840
DRR006521	Root Winter glycyrrhizin high producing strain	4.235
DRR006522	Root Winter glycyrrhizin high producing strain	4.212
DRR006523	Root Summer glycyrrhizin low producing strain	13.990
DRR006524	Root Summer glycyrrhizin low producing strain	13.962
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.175
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.979

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.952
SRR2868004	Drought Stress (root)	28.641
SRR2967015	Control (root)	18.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.128
SRR9715740	Leaf	29.654
SRR9715741	Leaf	41.911
SRR9715739	Root	2.454
SRR9715742	Root	15.866
SRR9715743	Root	15.046

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.870
SRR8749028	MeJA induced 9h	12.248
SRR8749029	MeJA induced 9h	11.423
SRR8749030	Uninduced	8.159
SRR8749031	Uninduced	29.496
SRR8749032	Uninduced	12.981

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.278
SRR8400027	Control - Root	15.508