Gene detail

Gene detail information of Glyur000779s00022830

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G47600.2	2.00E-35	beta glucosidase 34
NR	NP_001237501.1	2.55E-86	isoflavone conjugate-specific beta-glucosidase [Glycine max]
COG	YP_007314362.1	1.00E-37	beta-galactosidase [Halobacteroides halobius DSM 5150]
Swissprot	tr\|P26204\|BGLS_TRIRP	4.00E-62	Non-cyanogenic beta-glucosidase (Precursor)
trEMBL	tr\|Q08IT7\|Q08IT7_SOYBN	9.00E-87	Isoflavone conjugate-specific beta-glucosidase {ECO:0000313\|EMBL:BAF34333.1}

Sequence

Transcript Sequence

>Glyur000779s00022830.1
ATGGCAATCAACGGCTATTTCTTTTTGGGCATTCTTGCCCTTGTTGCTGCTGTTACAGTCACAGATGCAGTTGCTGTTTCGACTGTTGTTGACATTGGTTCGCTGAATCGGAGCAGTTTCCCTGCTGGCTTCATCTTTGGTGCGGGATCTTCAGCCTACCAGGTGCAGCAAATGAAGGCGGTAGAGGACCAAGNATATGGGATACCTTCACCCATAAACATCCAGGAAGATGTTAGGATCATGAAGGATATGAATATGGATTCGTACAGATTCTCAATCTCTTGGCCTAGAATACTCCCAAAAGGAAAGTTGAGTGGAGGCATAAATCAAGAAGGAATCAANTATTACAACAACCTCATCAACGAGCTATTGGCTAATGGTATACAACCATTTGTAACTCTTTTTCACTGGGACCTTCCCCAAACCTTAGAAGATGAATACGGTGGTTTCTTAAGCTCTCGCATAGCACATCAAAAGGGCAAGATAGGCATAACGTTGGTAAGTAACTGGGTCATGCCACTCTCAGAGGGTAGCATATCAGATCAAAAGGCTGCGAGGCGATCACTTGACTTCCAATATGGATGGTTTATGGAACCACTAACAACTGGAGACTATCCTAAAAACATAAGAGCCATCGTGAAAAGCCGATTGCCTAAGTTCTCTAAATGGCAATCGAGGCTAGCTGCTTCAAATTGGATATACTTTTATCCAAAGGGACTTCGAGATCTCTTGTTATACACCAAGAACAAATACAACAATCCAATAATTTACATCAATGAAAATGGTATGAATGAATTCAACGATGCAACACTTTCAGTGGAAGAAGCCCTTTTGGATATTTACAGAATTGATTACTATTATCGCCATTTNTTCTATCTTCGATCAGCAATTAAGGCCGGCGCGAACGTAAAGGGATTTTTCGCATGGTCATTTTTGGACTGTAATGAATGGTTTGCAGGCTTTACTGTCCGATTACAAAGATGGCTTGAAAAGGTACCCAAAGCTTTCTGCCCAATGGTACAAGAACTTTCTGAAAAGAAACAATACGAAGGTGCAGCAAACGAAGGTGGTAGAGGACCAAGCATATGGGATACCTTCACCCATAAATATCCAGAAGGAAAACTAAGTGGAGGAATAAACCAAGAAGGAATCGACTACTACAACAACCTTATCGATGAATTGGTGGCAAATGGCATAACATTGGTAGCTAACTGGTTCGTGCCTCTCTCAGATAACAAACTTGATCAAAAAGCTACTGAACGAGCTATTGACTTTATGTTCATGGATCCCCTCACAACTGGAGATTATCCAAAAAGCATGCGATCTTTGGTGAGAACACGGTTACCAAAGTTTACCAAAGAGCAAGCCAGGCTAGTCAATGGTATAAATGAGTATGATGATCCATCGTTATCACTTGAGGAATCTCTTCTGGATACTTTTAGAATTGATTATCATTATCGTCATCTCTTTTATCTCCAGAATGCAATCACGGCTGGTGTGAATGTAAAGGGATATTTTGCATGGTCTTTGTTGGACAATTTTGAATGGCAATTGGGCTATACTGTGCGATTTGGAATGACTTTTGTGGATTACAAAAATGGTTTAAAGAGATATCAAAAGCTCTCGGCCNTGTGGTTCAAAGATTTTCTCAAGTCAGAAATCAAACCAGCCAGGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00779	2029	21541	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01188	E3.2.1.21	EC:3.2.1.21	Starch and sucrose metabolism	map00500
			Cyanoamino acid metabolism	map00460
			Phenylpropanoid biosynthesis	map00940

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000779s00022830.1	PF00232.13	Glyco_hydro_1	74	157	1.30E-36
Glyur000779s00022830.1	PF00232.13	Glyco_hydro_1	228	324	3.10E-22
Glyur000779s00022830.1	PF00232.13	Glyco_hydro_1	371	400	7.10E-05
Glyur000779s00022830.1	PF00232.13	Glyco_hydro_1	460	552	3.20E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.274
SRR1783600	control	0.269
SRR1783602	moderate drought stress	0.210
SRR1811619	moderate drought stress	0.266

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.012
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.019
DRR006524	Root Summer glycyrrhizin low producing strain	0.016
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	164.736
SRR2868004	Drought Stress (root)	117.114
SRR2967015	Control (root)	118.236

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.122
SRR9715740	Leaf	0.043
SRR9715741	Leaf	0.289
SRR9715739	Root	0.191
SRR9715742	Root	0.268
SRR9715743	Root	0.212

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.840
SRR8749028	MeJA induced 9h	9.620
SRR8749029	MeJA induced 9h	6.767
SRR8749030	Uninduced	91.490
SRR8749031	Uninduced	679.412
SRR8749032	Uninduced	165.696

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	18.546
SRR8400027	Control - Root	18.059