Gene detail information of Glyur000776s00026217 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G54070.1 | 1.00E-14 | Dormancy/auxin associated family protein |
| NR | XP_004510546.1 | 1.52E-47 | PREDICTED: auxin-repressed 12.5 kDa protein-like isoform X2 [Cicer arietinum] |
| trEMBL | tr|V7AP11|V7AP11_PHAVU | 4.00E-45 | Uncharacterized protein {ECO:0000313|EMBL:ESW07397.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00776 | 79400 | 81788 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000776s00026217.1 | PF05564.7 | Auxin_repressed | 8 | 116 | 7.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.648 |
| SRR1783600 | control | 1.607 |
| SRR1783602 | moderate drought stress | 16.446 |
| SRR1811619 | moderate drought stress | 16.097 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.325 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.325 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.955 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 9.625 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.807 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.334 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.585 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.682 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 38.201 |
| SRR2868004 | Drought Stress (root) | 36.165 |
| SRR2967015 | Control (root) | 73.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.968 |
| SRR9715740 | Leaf | 23.603 |
| SRR9715741 | Leaf | 24.165 |
| SRR9715739 | Root | 2.149 |
| SRR9715742 | Root | 1.419 |
| SRR9715743 | Root | 0.974 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 64.811 |
| SRR8749028 | MeJA induced 9h | 336.693 |
| SRR8749029 | MeJA induced 9h | 80.942 |
| SRR8749030 | Uninduced | 64.372 |
| SRR8749031 | Uninduced | 115.725 |
| SRR8749032 | Uninduced | 386.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.835 |
| SRR8400027 | Control - Root | 27.502 |