Gene detail information of Glyur000776s00026214 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G17350.1 | 2.00E-93 | NADH:ubiquinone oxidoreductase intermediate-associated protein 30 |
| NR | XP_003547847.1 | 4.15E-141 | PREDICTED: probable complex I intermediate-associated protein 30-like isoform X1 [Glycine max] |
| COG | YP_007053644.1 | 6.00E-12 | NmrA-like family protein [Rivularia sp. PCC 7116] |
| Swissprot | tr|Q9LQI7|CIA30_ARATH | 2.00E-117 | Probable complex I intermediate-associated protein 30 |
| trEMBL | tr|I1MK50|I1MK50_SOYBN | 1.00E-141 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G01410.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00776 | 60298 | 62596 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000776s00026214.1 | PF08547.7 | CIA30 | 35 | 207 | 2.00E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.143 |
| SRR1783600 | control | 3.115 |
| SRR1783602 | moderate drought stress | 4.136 |
| SRR1811619 | moderate drought stress | 4.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.052 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.041 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.535 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.851 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.088 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.686 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.397 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.084 |
| SRR2868004 | Drought Stress (root) | 14.481 |
| SRR2967015 | Control (root) | 15.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.308 |
| SRR9715740 | Leaf | 14.097 |
| SRR9715741 | Leaf | 17.541 |
| SRR9715739 | Root | 8.581 |
| SRR9715742 | Root | 9.118 |
| SRR9715743 | Root | 10.696 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 24.591 |
| SRR8749028 | MeJA induced 9h | 26.860 |
| SRR8749029 | MeJA induced 9h | 20.673 |
| SRR8749030 | Uninduced | 14.944 |
| SRR8749031 | Uninduced | 8.735 |
| SRR8749032 | Uninduced | 9.320 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.205 |
| SRR8400027 | Control - Root | 18.852 |