Gene detail

Gene detail information of Glyur000776s00026209

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G72440.1	CCAAT-binding factor
NR	XP_003529850.1	PREDICTED: CCAAT/enhancer-binding protein zeta-like [Glycine max]
trEMBL	tr\|I1KHG9\|I1KHG9_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA07G04870.1}

Sequence

Transcript Sequence

>Glyur000776s00026209.1
CTTCATTCCTTCACTCTGCAACAATGGGGAAATCGAACACCGACAAGCCATCAATAAACGCAGAAGACATCGACCTCCTCAAATCCGACGTAGCCTCTTTCGCTTCTTCTCTCGGCTTGTCCACTTCCCAATCCCATTCAGGTTTCAACGATGTCGATTTTCGCAAGACCAAGCCAAACAAGCCACGGAAGAAGCAGCAGCAACAACAACAGCAAACACCCGAAAAAGCCACACCCCAAAATACCCAGAAGCCAAAAAACGAAACCTTAAGCAAAAACAACGGACCCCATGATAAGAAAGCCAACCCCAAACCTAAACCAAAACCCCCTGTTCTGTCACTTGGCGATGGCAACAGGGAAAAAGGGTACAACAAGTTTAGGAACCTTCCGAAGCTCCCTTTGATGAAAGCAAGTGCTTTGGGTGTGTGGTTTGAGGATGCTGCTGAGCTGGAAGCAAAGGTGATTGGGGAGGGGAAGAGGGTGGAGATAAGGAATGTGGAAGAGTGGAAGGGCTTTGTAGAGAAGAAGAGGGAAATGGGTGAGAGGTTGATGGCACAGTTTGCACAGGATTATGAGTCCACCAGGGGACACAGTAGTGATATTAAGATGTTGATTTCTACACAGAGGTCTGGGACTGCTGCTGACAAAGTATCTGCATTCTCTGTGTTGGTGGGGGACAACTCTATTGCAAACTTGCGGTCTCTTGATGCTCTTTTGGGAATGGTGACATCCAAGGTTGGAAAGCGCCATGCCTTGTCAGGTTTTGAAGCACTTCAAGAATTATTTATTGCAAGCTTATTACCGGATCGAAAATTGAAGACCCTGATACAGCGGCCTCTAAATCACATTCCTGAAACTAAAGATGGTTACTCCCTTCTACTTTTTTGGTACTGGGAGGAATGTTTGAAACAGAGATATGAACGGTTTATTGTTGCACTAGAAGAAGCATCCCGAGACATGCTACCTGCTCTAAAAAACAAGGCATTAAAGTCCATATATGTGCTACTGAGTAGGAAGTCAGAGCAAGAGCGCAAACTACTATCTGCACTTGTTAATAAACTAGGGGATCCGGATAATAAGGCAGCATCTAATGCTGACTATCACTTGTCCAACCTTTTGTCTGACCACCCAAATATGAAGGCTGTGGTTATTGACGAGGTGGATTCTTTTCTCTTTCGGCCTCATTTAGGACCACGTTCACAGTACCATGCTGTTAACTTCTTGAGCCAAATTCGACTCACCAATAAAGGAGATGGACCAAAAGTGGCAAAACGTCTAATAGATGTATATTTTGGACTGTTTAAGGTTTTGATCACTAGCGCAAGCAGCAATGAAAAGTTTGATAAAAGCGATAAGGCAAATCCAAAAGAGAAAAAATCAAAAGGGCAATCAGAATCACACGCGGAATTGGACTCCCGGCTTCTATCAGTTCTCTTAACTGGAGTGAATAGAGCATTTCCTTTTGTCTCGAGTAATGAAGTTGATGACATCATTGATGTTCAAACACCAGTACTTTTCCAATTGGTTCATTCAAAGAATTTTAATGTAGGGGTTCAAGCGCTGATGCTTCTTGATAAAATTTCATCCAAGAATCAGATAGCAGAAATGTTCATTGCACTTCTTCTAAGAGCAATGAAAAGGGATGTTAATTTAAAGCGTGTGGCTGCATTTTCTAAACGTCTATTACAGATTGCACTTCAGCAGCCACCACAATATGCCTGTGCATGCCTTTTCCTTCTTTCTGAGCTCCTTAAAGCCAGACCTCCTTTATGGAACATGGCATTGCAGAACGAGTCTCTTGATGACGAACTCGAACACTTTGAAGATGTTATAGAAGAAACTGATAATGAACCTAGCACCGTACCAANTAAACAAACTGATGATAATGCACCTGTTCAGAATGGCGAGGATGGCAAGTCTGACGCGGGTTCTTCAGAAAGTGAAGATGATCTTCCAGCATCTTCTGAAGATGATGATGATTCGGGTGATGCTCTAGAGGATGCAGGATTTTTGCTTGCAAAGAGTGATATGAATCATAAGAAATCAAAGTCTGCATCTGATGATGAAGGTCAGAAATCACAGGCTATGATCCACGACTCAGAGAGCCCTCTTACTGACCGTGTTAGTTGGTGGGAGTTAATGGTACTTGCTTCACACGCACACCCTTCAGTTGCCACCATGGCCAGAACTATTCTTTCCGGGGCCAACATTGTCTATAACGGAAACCCGTTGAATGACCTGTGTCTGACAGCTTTCCTAGACAAATTCATGGAGAAGAAACCGAAACAGAGTACTTGGCATGGTGGTTCTCAGATTGAACCTGCCAAACAGATGGACTTTAACAACCATTTGATAGGGCCTGAAATTCTTTCACTAGCTGAAGTGGATGTACCACCAGAGGATCTTGTCTTCCACAAGTTCTACACAAACAAAATGAGTTCCTCTTCAAAACTTAAGAAAAAGAAGAAGAAGAAATCAGCTGATGAGGAGGCTGCTGAGGAGTTGTTTGATGTTGAGGACGGTGAGGTTGATGGTGGGGATGAGAGTGACAATGAAGAGATTGATAATCTGTTGGATTCTGCTGATCATTCTTTGGAACCAGACAGTGAAGTCTTTGATTATGATGATTTGGATAAAGTTGCCAATGAGGATGATGAGGACTTGATTGGTGATGTTAGTGATGCAGAGATAGATATAGATATACCCTCAGATATAGGAGAGGAAGATGATGCTGATGCTCCAGTTGCTGATGATGATGTTAGTGATGATAACATTGGTCTTGACATAGGAGATGTTGATGATGCTTCTGATGCTGATGAGGATCATCAAGTTGACAAAAGAAAACGAAAACGTAAAAGTGGTGGCAAGAGTGGTGTGTCCCCATTTGCAAGTTATGAAGAGTTTGAACATCTAATGGAAGATGATAACCAAACTGAGAAAAATCCTTCCCAAAAGAAAAACAAATCTAAAAAAAGAAAGAAGTAGACTTGTCAAGTTACATCTGAATCTCCCAAAGATGCTTGGTCGAATCTCAAGTGTTACTAAAGCATCAAATTGTCAACAGCTTCAAGAAACTCAAATCAGTCAATCAAATATCTCCATGTAATTTGTATTATTATTTTTTTAATTACAGTTTACGAATTTTGCGTGGGGTTGCTGACGTGGTGGCCATGTATTCATCCATTGTTACCTAGTGCTCCTTTCTTTAAGATGAAGTAGTTTTTTTGGTA

Protein Sequence

>Glyur000776s00026209.1
MGKSNTDKPSINAEDIDLLKSDVASFASSLGLSTSQSHSGFNDVDFRKTKPNKPRKKQQQQQQQTPEKATPQNTQKPKNETLSKNNGPHDKKANPKPKPKPPVLSLGDGNREKGYNKFRNLPKLPLMKASALGVWFEDAAELEAKVIGEGKRVEIRNVEEWKGFVEKKREMGERLMAQFAQDYESTRGHSSDIKMLISTQRSGTAADKVSAFSVLVGDNSIANLRSLDALLGMVTSKVGKRHALSGFEALQELFIASLLPDRKLKTLIQRPLNHIPETKDGYSLLLFWYWEECLKQRYERFIVALEEASRDMLPALKNKALKSIYVLLSRKSEQERKLLSALVNKLGDPDNKAASNADYHLSNLLSDHPNMKAVVIDEVDSFLFRPHLGPRSQYHAVNFLSQIRLTNKGDGPKVAKRLIDVYFGLFKVLITSASSNEKFDKSDKANPKEKKSKGQSESHAELDSRLLSVLLTGVNRAFPFVSSNEVDDIIDVQTPVLFQLVHSKNFNVGVQALMLLDKISSKNQIAEMFIALLLRAMKRDVNLKRVAAFSKRLLQIALQQPPQYACACLFLLSELLKARPPLWNMALQNESLDDELEHFEDVIEETDNEPSTVPXKQTDDNAPVQNGEDGKSDAGSSESEDDLPASSEDDDDSGDALEDAGFLLAKSDMNHKKSKSASDDEGQKSQAMIHDSESPLTDRVSWWELMVLASHAHPSVATMARTILSGANIVYNGNPLNDLCLTAFLDKFMEKKPKQSTWHGGSQIEPAKQMDFNNHLIGPEILSLAEVDVPPEDLVFHKFYTNKMSSSSKLKKKKKKKSADEEAAEELFDVEDGEVDGGDESDNEEIDNLLDSADHSLEPDSEVFDYDDLDKVANEDDEDLIGDVSDAEIDIDIPSDIGEEDDADAPVADDDVSDDNIGLDIGDVDDASDADEDHQVDKRKRKRKSGGKSGVSPFASYEEFEHLMEDDNQTEKNPSQKKNKSKKRKK

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00776	26516	33952	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000776s00026209.1	PF03914.12	CBF	516	721	1.00E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.140
SRR1783600	control	11.313
SRR1783602	moderate drought stress	14.120
SRR1811619	moderate drought stress	14.078

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	18.462
DRR006520	Root Summer glycyrrhizin high producing strain	18.091
DRR006521	Root Winter glycyrrhizin high producing strain	10.059
DRR006522	Root Winter glycyrrhizin high producing strain	9.767
DRR006523	Root Summer glycyrrhizin low producing strain	20.803
DRR006524	Root Summer glycyrrhizin low producing strain	20.823
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.678
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.672

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.371
SRR2868004	Drought Stress (root)	18.214
SRR2967015	Control (root)	18.658

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.593
SRR9715740	Leaf	11.658
SRR9715741	Leaf	8.829
SRR9715739	Root	1.029
SRR9715742	Root	16.378
SRR9715743	Root	14.044

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	29.275
SRR8749028	MeJA induced 9h	40.321
SRR8749029	MeJA induced 9h	20.491
SRR8749030	Uninduced	5.109
SRR8749031	Uninduced	2.338
SRR8749032	Uninduced	3.820

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.389
SRR8400027	Control - Root	21.051