Gene detail

Gene detail information of Glyur000776s00026208

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G04770.2	8.00E-112	40s ribosomal protein SA B
NR	XP_004502927.1	0	PREDICTED: 40S ribosomal protein SA-like [Cicer arietinum]
COG	YP_004004453.1	6.00E-53	30S ribosomal protein S2 [Methanothermus fervidus DSM 2088]
Swissprot	tr\|O65751\|RSSA_CICAR	0	40S ribosomal protein SA {ECO:0000255\|HAMAP-Rule:MF_03015}
trEMBL	tr\|G8A187\|G8A187_MEDTR	0	40S ribosomal protein SA {ECO:0000256\|HAMAP-Rule:MF_03015}

Sequence

Transcript Sequence

>Glyur000776s00026208.1
GTGTATGGCTAAAATCTCAAAGTGTATTTACCAATTTCCGCTTTCGATTGGATCAGGATCTGTTTGAAACTCCTATGGAAGACACCGAAAAAAATAAAAACAGAGCCCATGAACAAAAGGGCAAAAACGTCATTTAAGTTGTAAACTAGGGTTTCTGGAGGTATATTATTACTGCGCACTTGCGCAGCGTCTTAGAATCCCCATCAACTCCTCACCACCTCAGTGTTCTTCGCTCCACTTTGCTCTCCCATAGCACAAAAATCCGCAGCCATGGCCGCCACAAACGCCACCGCAGCCCCGCCGCGTCAGCTGTCACAGAAGGAAGCTGACATTCAGATGATGTTGGCTGCCGACGTCCACCTCGGCACCAAAAACTGCGACTTCCAAATGGAGCGTTACATTTTCAAGCGCCGCAACGACGGGATTTACATTATAAATCTGGGGAAGACATGGGAGAAGCTTCAGATAGCTGCTAGGGTTATTGTTGCTATTGAGAACCCTCAGGATATCATTGTTCAGTCTGCAAGGCCTTATGGTCAGAGAGCTGTTCTTAAGTTCGCTCAGTACACTGGAGCTCATGCTATTGCTGGAAGGCACACTCCTGGTACCTTCACCAATCAGCTCCAAACTTCCTTCAGTGAGCCACGACTTCTCATTCTCACCGATCCAAGGACTGATCACCAGCCCATTAAGGAGGCTGCTCTTGGAAACATTCCAACAATTGCTTTCTGTGACACTGATTCTCCTATGAGGTATGTTGACATTGGTATTCCTGCCAATAACAAGGGGAAACACAGCATAGGTTGTCTCTTCTGGCTTCTTGCAAGGATGGTGTTGCAGATGCGTGGTACTATTCGCCCTGGTCTTAAGTGGGATGTTATGGTGGATTTGTTCTTCTATAGAGAACCCGAGGAGGCCAAGCAGCAAGAGGAGGAAGAAGCTCCCGCTGCAGATTATGCCATTGCAGACTTCAATCCAGCTTCTATTCCTGCTGATGGACAGTGGCCTGCTGCAATTGACCAANCATGGACCGATGCAGTTCCACAACCTATTCCAGCAGTTCCTGGAGTCAACTGGGCGGCAGCCCCGGAAGCTGGAGACTGGGGTGAGGCTGTTCCACCACCACAACCACTTCCTACTCCCGGAGTTGAATCTGTCCAACCATCTGGGTGGGAATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00776	23974	26036	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006412 translation

cellular_component

GO:0005622 intracellular

GO:0005840 ribosome

GO:0015935 small ribosomal subunit

molecular_function
GO:0003735 structural constituent of ribosome

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000776s00026208.1	PF00318.15	Ribosomal_S2	24	191	7.00E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	598.331
SRR1783600	control	599.789
SRR1783602	moderate drought stress	419.921
SRR1811619	moderate drought stress	416.484

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	504.489
DRR006520	Root Summer glycyrrhizin high producing strain	499.967
DRR006521	Root Winter glycyrrhizin high producing strain	157.342
DRR006522	Root Winter glycyrrhizin high producing strain	152.679
DRR006523	Root Summer glycyrrhizin low producing strain	318.653
DRR006524	Root Summer glycyrrhizin low producing strain	318.400
DRR006525	Leaf Summer glycyrrhizin high producing strain	183.599
DRR006526	Leaf Summer glycyrrhizin high producing strain	182.298

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	355.617
SRR2868004	Drought Stress (root)	206.260
SRR2967015	Control (root)	203.311

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	150.630
SRR9715740	Leaf	125.597
SRR9715741	Leaf	119.047
SRR9715739	Root	281.234
SRR9715742	Root	257.409
SRR9715743	Root	262.697

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	626.844
SRR8749028	MeJA induced 9h	340.749
SRR8749029	MeJA induced 9h	398.819
SRR8749030	Uninduced	70.692
SRR8749031	Uninduced	21.635
SRR8749032	Uninduced	52.739

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	246.333
SRR8400027	Control - Root	202.342