Gene detail

Gene detail information of Glyur000774s00027684

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G45400.1	3.00E-57	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_007133834.1	1.73E-128	hypothetical protein PHAVU_011G212800g [Phaseolus vulgaris]
COG	YP_002015379.1	4.00E-36	NAD-dependent epimerase/dehydratase [Prosthecochloris aestuarii DSM 271]
Swissprot	tr\|Q40316\|VESTR_MEDSA	8.00E-108	Vestitone reductase
trEMBL	tr\|V7ALU1\|V7ALU1_PHAVU	6.00E-129	Uncharacterized protein {ECO:0000313\|EMBL:ESW05828.1}

Sequence

Transcript Sequence

>Glyur000774s00027684.1
CTGAAAATGTCCTGAATCAGGTTACAAACGGAATATATATATATACACACACACATTGGGGGTGTTCGTCGAACATTATTCCCCCTTTGTTATCTCTCTTTCTCTTTCTTTCTCACATCACTATTCGTATAATCTATCACGTTGTCTAAGTTCACTCTTTTCTCCTAAGGGTGTGAAGAAAACCATTATTCATGGTCATCAGTGATTAAGAATTAATTGAGTTTAGTAGTAAACCCAAAAAACGACAAACATTTCAACAACAAAATGACTTTTTTAGTGGGTAAAGTTGTTAACTTGTCTGTAGTCTGGAAGCGATCTTAAGGAAATCCCATCCTAGCTATAGTTAACTTGGTAGTTGGTAGTCAGGTAACGAATATGACAAAGCTATTTCTAATGCCTGATTGCCTGAAGTCTGAACGAGTATTTTCAGGTTGAATTGCCCAATTAAGCAGTGTAAATGGAGAATGGGAAGAGTGAAAGAGAATAGACAATTTACTTTCACAAAATTAAAAACGGCAAACCATATGATCAACTGGAATNTTTCGTCGATGCCCGAGACGGACCGATAGACAGGTTCCTTTCATTCAATATGCGCATGAAATGCACCCATGTTTCTCCATCCATACATGTATGACTTATACGAGGGAGAGAGGAGATGTGCTTCTTCTCATGATGGGAATGGATGGACGGGTGGCAGAAAAGTTGTGATTTGACACATGGAAAGGAAATGGCAATAAGACATACTAATAATGAGCAGAGTTATCTGTAGCGTGTGCCCCTCTATCTATCATTCTCATTTCTTTTATTCTATTCCCTCTTCCTTCATGTCCTTTCCATTAATGCAATTCTCGTTTTCGTGATTCAAAATATCATCCATCAGAGCCTCTCGGTGGTTGCCTTGCCTGTGCACAACGAAGTGTGAACGGCAACGTCGTTGGTCTGATCTGTGACAAAAGAGAGGACTCTGCAACAGAAGCATGGACCGGTGGAGATGGGAGGCGATGCTGTCCAAACCACTCTCAATGGACGGTGAGAGATAACCGGAGAAGGGAAGAAAGAGAAGATCTACAACCGGAAAAACCGTTTCAACCCACCCGCTGGAACCGACAACCGCTAGAAGTGCCACCCGCACTACCCGATTCTTAGACGGACGGAAACCGATGAAGTTTTATGCTCTTTGGTTTCAATCGATCGGTTGAACCATTTTTGGACCGAATCCGACCGTAACCATCTGATCTCCAGCCCTGATCTAAAGATCTGTCTCGCCTTTTTTCAAAATGTTCTTATGCAAATTTATAAATTTGGAATTAAATATTCAGGAAGTATAAACCAGTCATCAGAGCAAGAGAGAAGGTGTGAGGAAAATGGAAGAAAGCAAAGGAAGAGTGTGTGTTACAGGAGGTACAGGGTTTATTGGTTCATGGATAATCAAGAGGCTCCTTGAAGATGGTTACTCTGTTAATACCACTATGAGACCCGACCCAGAACACAAGAGAGATGTCAGTTTTCTTACCAACTTACCTGGAGCACCCCAAAGGCTACAAATTCTCAGCGCTGATCTCAGCAACCCAGAAAGTTTCAGCGCAGCCATTGAAGGGTGCATTNGTGTTTTCCATGTTGCTACCCCAGTTGACTTTGAGCTGAGAGAACCTGAGGAGGTGGTGACCAAAAGAAGCATTGATGGTGCACTAGGCATTCTGAAGGTCTGCCTCAATTCCAAGACCGTGAAGCGAGTTGTGTACACTTCGAGTGCCTCTGCTGTGGGGGTTATCCCTGGCAAAGAAGATGGAGTAGTGAAGGATGAAAGTTGTTGGAGTGATGTGGATTACCTTAGAGCTTCAAAGCCATTTGGTTGGTCATATGCAATTTCCAAGACATTGGCAGAAAAGGCAGTGCTCGAATTTGGAGAACAGAATGGGTTGGATGTTGTGACAATAGCTCCAACTTTTGTCTTTGGACCCTTCATTTGTCCAAAGCTTCCTGGCTCAGTCCGTTCTTCATTGTGCTTGGCATTTGGTATCTCTTTCATGCAAATTGAAGGTGTGAAGTTACCAGATTTATCATCAAAGAAGCTCATAGATGCTGGATTTGTGTTCAAGTATGGACTTGAGGAAATGCTTGATGGTGCAATTCAATGCTGCAAGGAAAATGGCTACCTGCGAGGTGGTTCTGTACCCTTTATGTCATAGGATGGTTGTCCATATAATGAACCAGTAGTTATTATTATCGTGTGTAATAAATGGTTGTTCAAGCCAGCGATTGGTACTTAATGTGTTTGAGATTGGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00774	113296	117037	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0050662 coenzyme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000774s00027684.1	PF01370.16	Epimerase	8	200	1.10E-23
Glyur000774s00027684.2	PF01370.16	Epimerase	8	200	1.10E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.516
SRR1783600	control	3.637
SRR1783602	moderate drought stress	12.474
SRR1811619	moderate drought stress	12.130

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.081
DRR006520	Root Summer glycyrrhizin high producing strain	9.858
DRR006521	Root Winter glycyrrhizin high producing strain	8.857
DRR006522	Root Winter glycyrrhizin high producing strain	8.543
DRR006523	Root Summer glycyrrhizin low producing strain	14.170
DRR006524	Root Summer glycyrrhizin low producing strain	14.128
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.536
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.543

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.453
SRR2868004	Drought Stress (root)	1.884
SRR2967015	Control (root)	2.743

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.634
SRR9715740	Leaf	4.478
SRR9715741	Leaf	0.936
SRR9715739	Root	0.261
SRR9715742	Root	10.941
SRR9715743	Root	8.869

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.310
SRR8749028	MeJA induced 9h	0.442
SRR8749029	MeJA induced 9h	0.160
SRR8749030	Uninduced	0.512
SRR8749031	Uninduced	0.276
SRR8749032	Uninduced	0.271

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.597
SRR8400027	Control - Root	7.680