Gene detail

Gene detail information of Glyur000774s00027677

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G08040.2	2.00E-86	MATE efflux family protein
NR	KHN37617.1	6.80E-175	MATE efflux family protein FRD3 [Glycine soja]
COG	YP_003706607.1	3.00E-24	MATE efflux family protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q9SFB0\|FRD3_ARATH	3.00E-127	MATE efflux family protein FRD3
trEMBL	tr\|G8A1T4\|G8A1T4_MEDTR	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914} (Fragment)

Sequence

Transcript Sequence

>Glyur000774s00027677.1
CTTGTATTTAAGTTTTTTTTCCTTTCTCGGGAGATATTAGGGATTGCATTCCCATCTGCTATTGCTGTTGCTTTTTTTCCCATTGCTTCTCTCATTGACACAGCATTCATAGGCCACTTGGGACCGGTGGAACTTGCTGCAGCAGGGGTTTCCATTTTTTTTTTCAACCAAGCTTCAAGGGTTACCATATTCCCTCTGGTTAGTATTACAACTTCTTTTGTAGCTGAGGAAGACACTATTGAAAAGATGAATACCGAAGCAGCCCAAAATGACATTTTTTTGTTAACCGAAGTTATAACGCCTAAGGATCATCAACATCAAGACATTGAAAATTTTTTTTACCAAGAGTGTATCAAGGTTCCAAAAGAATCTATGAGACACATTGCTTCAGCATCAACTGCACTACTTTTTGGCACTTTTTTTGGCCTCCTTCAAGCTGCAATCCTTATATTTGCAGCAAAACCTCTATTAGGTGTTTTTTTTCTGAAACATGATTCTCCTATGCTAAAACCAGCAGAGAAGTACTTAAGATTGAGATCTTACGGTTCTCCTGCAGTTCTTCTCTCCTTGGCCATACAAGGAATCTTTAGAGGGTTCAAGGACACAACAACTCCTTTATATGTCATTGTTTCGGGATATGCATTGAATGTCGTATTGGTTTTTTTACTCATNTTCACATTGAAACTGGGCCTCAACGGTGCAGCCATGGCACATGTACATTTTTTTTTTCACCCTCTTGTTGATGTTGACGAAAAAGGGGGTCTCTTGTTGGCAAGGGTAGTAGTTTTTTTATTCTGCATGACCTTTGCAGCATCATTGGCAGCAAGGTTAGGTCCAATTCCTATGGCTGCATTTCAACCCTGCTTACAAATCTGGTTGACATCATCCCTTCTTGCTGATGGTTTTTTTGTTGCTGTTCAGGACTATAAAAAGACAACAGCTGCTGCTACACGAGCACTGCAAATGAGTTTTGTATTGGGAATGGGGCTCTCTGTTCTTGTTGGATTTGGATTTTACTTTGGAGCTGTTTTTTTTTCAAAAAATGTTCAAGTTGTGAACTTACTTAAAATTGGCATCCCGTTTGTTGCTGCTACCCAACCAATCAATTCTTTTTTTTTTGTCTTCGATGGTGTGAATTATGGGTCTTCTGATTTTGCATATTCTGCATTTTTTTTGGATGGGAACAGGAACTGGACCTTGGCGCTATCTCAGAGGCCCCTCATTGCCATAGAAATATCTTACTCATCTGAAGCTGCTGAGCATAGCACGTGTTCTGCCTTTTTTTTCAGCACCTATAGGCGATATATGGAATTATGGACTCTATCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00774	43886	48605	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000774s00027677.1	PF01554.13	MatE	130	222	1.30E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.039
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.336
SRR1811619	moderate drought stress	0.389

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.163
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.502
DRR006522	Root Winter glycyrrhizin high producing strain	1.319
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.117
SRR2868004	Drought Stress (root)	9.453
SRR2967015	Control (root)	2.230

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.018
SRR9715741	Leaf	0.017
SRR9715739	Root	0.825
SRR9715742	Root	0.378
SRR9715743	Root	0.587

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.033
SRR8749028	MeJA induced 9h	0.066
SRR8749029	MeJA induced 9h	0.084
SRR8749030	Uninduced	0.016
SRR8749031	Uninduced	0.051
SRR8749032	Uninduced	0.024

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.392
SRR8400027	Control - Root	1.368