Gene detail

Gene detail information of Glyur000774s00027675.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G41900.1	CCCH-type zinc finger protein with ARM repeat domain
NR	KHN37619.1	Zinc finger CCCH domain-containing protein 30 [Glycine soja]
Swissprot	tr\|P93755\|C3H30_ARATH	Zinc finger CCCH domain-containing protein 30
trEMBL	tr\|I1M0Y0\|I1M0Y0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G27280.1}

Sequence

Transcript Sequence

>Glyur000774s00027675.1
TGGAGGTTGAAACCTTAACTCTTCTCTGTTCCAGATCTCGTTGCTTCCTGCAGTTTAACTCTTCGCCTTTTCACGTTTCACATTTCTCATTCTGATTTCGTTGCAAGCGAGTTATTTCGGTTTCCGAAGATGATCGCCACCTCCTCCTCCGGTAACCGTTTACTGGAACTTGCATCTAACAATGATATTGAAGGTTTTAAGTTGCTCTTAGAGAAGGAAGGTTCTTCAATTAATGAGGTAGGGCTCTGGTATGGCCGGCAAAATGGATCCAAACAAATTGTTCTTGAGCGTAGAACTCCTTTGATGGTTGCTGCTACATATGGTAGCATTGATGTTTTGAAGTTTATACTCTCGTGTCCGGAAGCAGATGTGAATTTTGCCTGTGGAATCAATAAAAGCACTGCCCTTCACTGTGCTGCTTCTGGTGGGTCTGTTAATGCAGTTGATGCTGTGAAGCTTCTTATATCGGCTGGTGCCGATCTCAATTGCATGGATGCCAATGGAAATCGTCCTGTCGATGTCATTGTTGTTCCTCCCAAGCTGCAAGGGATGAAAGCAATTCTTGAGGAACTCCTTTNGGACAGTGCTTCTGATGGCTCTGTTGGTGACTTCCCTGTTCCGGTATCTTTTAATTCTTCTAGCCCCNGTTCACCTGTGCATTTATTGTCACGTGAAAATGGGATGCCATACTCTCCTTCAGGCTCACCACCTTCTCCNGTGGCGGATTCAAAATTTACTGATGCGGCCATCAGCTCTTTATCAGAGAAGAAAGAATATCCAATTGATCCATCACTTCCTGATATAAAAAACAGCATATATGCAACAGATGAATTTCGGATGTTTTCTTTCAAGGTCCGTCCTTGTTCCCGTGCATACTCTCATGATTGGACCGAGTGTCCATTTGTTCATCCTGGAGAGAATGCTCGGAGGAGAGACCCCAGAAAGTTCCATTACAGCTGTGTGCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGGCGTGGAGATATGTGTGAATATGCTCATGGGGTATTTGAGTGNTGGCTACACCCTGCTCAGTACAGGACACGCCTCTGTAAAGATGGCANCAGTTGCAATAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAACTGCGACCGCTGTATGTGTCCACTGGATCTGCCGTTCCTTCTCCACGATCATCTGCCTCTGCCCCTAATGTTATGGACATGGCTGCTGCAATGAACCTTTTGCCTGGTTCACCTTCGTCAGTCTCTTCCATGTCCCCATCTCATTTTGCCCAGCCAATGTCCCCGTCTGCTAATGGCATCTCACTCTCATCTGCTGCTTGGGCACAGCAAAATGTTCCAGCCCTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGTTTGAGGTCTTCTCTTAGTGCTCGTGACATTCCACCTGAAGACTTGAATGTGTTGAGTGATTTTGATGGCCAGCAGCANGTTATGAATGACTTGAGCTGCTTCTTGCAGCCCCATCCTGGTGCTGTTTCAGCCAGTCGATCTGGTCGGTCTAAGACACTAACTCCATCAAATCTGGAAGAGCTATTTTCTGTTGAAATCTCATCATCTCCACGGTATTCTGACCCAGCAGCGGCTTCTGTTTTTACCCCTACACATAAATCAGCTGTTCTTAATCAGTTTCAACAGCTTCAAACTATGTTATCACCTATAAATACTAATGTGCTGTCTCCTAAGAATGTTGAGCATCCTCTGTTACAGGCTTCATTTGGGGTTTCTCCTTCTGGTAGGATGTCACCTAGAAGTGTTGAACCAATATCCCCAATGAGCTCTCGAATATCTGCATTTGCTCAGCGTGAGAAACAGCAGCAACAGCTGCGGAGCGTAAGTTCTCGGGACCTTGTAGCCAACAATCCTGCCTCAGTTGTTGGATCCCCTGTAAACACTTGGACTAAGTGGGGTTCTCCTAATGGAAAAGCTGATTGGTCAGTAAATGGAAACGATCTAGGTCGTCAAATGCGGAGATCATCCTCATTTGAACTTAAAAACAATGGGGAAGAGCCTGATCTATCCTGGGTCCAGTCCCTAGTGAAGGAACCATCACCCGAGATGACTAAAGAGAAGTTTGCATCTTCTGGACCTATTGCATCTGCTGATGAATTGAATCCCAATTCCCAAGTTGAATCCACTGATCATTCTGTTTTAGGAGCTTGGCTTGAGCAAATGCAACTGGATCAGCTTGTAGTCTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00774	32400	35702	+

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000774s00027675.1	PF12796.2	Ank_2	13	121	3.10E-14
Glyur000774s00027675.1	PF00642.19	zf-CCCH	279	299	7.20E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	97.101
SRR1783600	control	98.673
SRR1783602	moderate drought stress	105.395
SRR1811619	moderate drought stress	105.811

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	110.336
DRR006520	Root Summer glycyrrhizin high producing strain	106.543
DRR006521	Root Winter glycyrrhizin high producing strain	32.771
DRR006522	Root Winter glycyrrhizin high producing strain	32.057
DRR006523	Root Summer glycyrrhizin low producing strain	87.575
DRR006524	Root Summer glycyrrhizin low producing strain	86.933
DRR006525	Leaf Summer glycyrrhizin high producing strain	23.671
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.447

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	41.626
SRR2868004	Drought Stress (root)	52.214
SRR2967015	Control (root)	51.970

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	27.648
SRR9715740	Leaf	39.347
SRR9715741	Leaf	34.145
SRR9715739	Root	115.268
SRR9715742	Root	109.024
SRR9715743	Root	105.939

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.753
SRR8749028	MeJA induced 9h	7.400
SRR8749029	MeJA induced 9h	2.518
SRR8749030	Uninduced	6.005
SRR8749031	Uninduced	1.743
SRR8749032	Uninduced	1.943

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	81.915
SRR8400027	Control - Root	60.689