Gene detail

Gene detail information of Glyur000773s00021472

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37100.1	0	Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
NR	XP_004509187.1	0	PREDICTED: uncharacterized protein LOC101489677 isoform X1 [Cicer arietinum]
COG	YP_290835.1	2.00E-29	hypothetical protein Tfu_2779 [Thermobifida fusca YX]
Swissprot	tr\|Q8LGM7\|MOCOS_SOLLC	1.00E-19	Molybdenum cofactor sulfurase {ECO:0000255\|HAMAP-Rule:MF_03050}
trEMBL	tr\|A0A072TSJ9\|A0A072TSJ9_MEDTR	0	Catalytic/pyridoxal phosphate-binding protein {ECO:0000313\|EMBL:KEH20479.1}

Sequence

Transcript Sequence

>Glyur000773s00021472.1
ATGCATCTCTCACTATGGAAGCCCATTTCTCACTGTGCTGCTATGATCATGGACAAGAAGAGTAGGAGGAAGGATGAATCCATGGTTGATATAAGGAGAAACCCATCAATGCTCCGAAAGCTTCAAGAAAACAAGCTGAGGGAAGCTCTTGAGGAAGCTTCAGAAGATGGGTCACTCTCCAAATCACAAGACATGGAACCTGACACTGCTGGGAACCAGGATGAGGGCCTTGGGAGATCCAGATCGCTGGCCAGGCTGCACGCACAGCGCGAGTTCCTTCGCGCCACGGCCCTTGCAGCCGAGCGCACATTCGAGTCTGAGGAGGAAATTCCCAGCCTCCAAGAAGCATTTTCCAAGTTCCTTACTATGTACCCCAAGTACCTGTCCTCGGAGAAGGTTGATCAGTTGAGGTCTGATGAATACTCCCATTTGCCACCCAAGGTATGCCTTGACTACTGTGGATTTGGACTCTTCTCTTTTGTTCAGACCCTTCACTATTGGGAGTCTTGCACGTTTAGCTTGTCTGAGATAACTGCAAATTTGAGTAACCATGCACTTTATGGTGGTGCTGAGAAAGGAACTGTTGAGCATGATATAAAGAGTAGAATTATGGACTATCTGAATATCCCTGAGAATGAATATGGCCTTGTTTTTACTGTCAGTAGAGGATCAGCTTTTAAATTGCTGGCTGAATCGTACCCTTTCCAAACGAACAAAAAATTGTTGACCATGTTCGACCATGAGAGCCAGTCTGTTACTTGGATGGCTCAGAGAGCCAGGGAGAAAGGTGCCAAAGTGTACAGCGCATGGTTCAAATGGCCAACTCTCAAACTCTGCTCTACTGATTTGAGAAAACAGATTTCCAATAAGAAGAAGAGGAAGAAGGATTCAGCTACTGGTCTTTTTGTGTTCCCGGTTCAATCTAGAGTAACTGGGGCTAAGTATTCGTACCAGTGGATGGCCTTGGCACAGCAGAACAACTGGCATGTCTTGCTTGATGCCGGATCATTGGGCCCCAAGGACATGGATTCACTTGGCTTGTCCCTTTTCCGGCCAGATTTTATAATTACATCATTTTACAGGGTATTTGGGTATGATCCCACGGGTTTTGGTTGTCTTCTGATCAAGAAATCGGTGATGGCAAGCCTTCAGAATCAATCTGGGAGTACTGGGTCTGGAATGGTAAAGATTACCCCCGAGTTTCCCATGTATTTGAGTGATTCCGTAGATGGTTTGGATAAATTGGCTGGGANTGAAGATGATGAAGTCAATGGGGCTGGTGACATGAGTTCTGAACCTCGTCAGGCATCACAGTTGCCTGCCTTTTCTGGTGCATACACGGCTTCGCAGGTCAGAGATGTATTTGANACTGAAATGGATCACGACAGCTCTGAAAGAGANGGAACGAGCACTATATTTGAAGANACTGAGAGTNTTTCTGTTGGAGAAATGATAAAGAGCCCTGTCTTTAGTGAGGATGAGTCNTCTGACAACTCNTTTTGGATTGATNTGGGTCAGAGTCCATTGGGGTCNGANAATGCNGGTCNNTCTTATAAACNNAAGNTAGCTTCTCCCCTACCACCATTCTGGTTCAGTGGAAGGAAGAACCAGAAGCAACATTCTCCAAAACCANCTTCCAAGATGTATGGCAGCCCTATGTATGATGACAGAGAGGTAANCCTAGGTNCTCATGACGAACACCGTGTNCTGTCNTTTGATGCTGCTGTCCTAATGTCACAAGAANTAGACCGTGTNAANGAGGTCCCNGAAGAAGANCANGTNGAGGAAGTTNATCANTATTCAAGANATGGAAATGGGTCAGATCGTCTGCATGNNAATGAGATCATGGAAGAACCTGGAACCAGCAAANCAGTTCAGAATGGATCTGTTNCTCTGAAAGAATCTTGGCTCAGTAATNCAACTTCTCTTNCTCGGCATCAAAGCNTAGAGAATGGCTCTACCTCTGAAATATGTNCTGATNTTAAAGAGAGTGCCATAAGAAGGGAAACTGAAGGTGAATTTAGGTTGTTGGGTCGGAGAGAAGGGAATCGANATGGTGGTGGTAGGTTTTTTGGTTTGGAAGATAATGAACNCAACAGCAGGGNNAGNAGAGTGTCATTTAGCNTGGAAGACAANCNTAAGGANTACCTANNCCAGACCTTGGANACNGGGGACATATCTGCAACNAGCTTAGATGATGAAGAGGTNTCAAGNGACGGAGAATATGGTGATGGACAGGATTGGGGAAGGAGGGAACCAGAGATAGTATGTCGTAATATTGANCATGTTGATATGCTTGGTCTCAATAAAACTACNCTTAGACTTCGGTTTTTGATAAATTGGCTNGTTACNTCNTTACTGCAACTGAAGTTACNTGTTTCTGATGGGGNTGAAAAGGCAAACCTTGTTCACATCTATGGNCCNAAAATAAAATATGAAAGAGGNGCAGCTGTGGCTTTCAATGTCCGGGACAGAAGTAGGGGACTAATAAATCCTGAGATTGTTCAAAAGCTGGCTGAAAAAGAAGGAATCTCTCTTGGTATTGGTTTTCTTAGTCATATACAGATTCTTGATAGCTCAAGACAGCAGCGTGGAGCTCTGAATCTTGAAGACACAACACTTTGCAAGCCTATGGAGAATGGTCGGCGCGATGGAAAAGGTAGCTTTGTAAGGCTTGAAGTTGTCACAGCTTCACTGGGATTTCTTACTAATTTTGAGGATGTGTATAAATTGTGGACTTTTGTGGCGAAGTTTCTCAACCCATCATTCATCAGAGAAGGTGGTCTTCCTACTGTTGAAGAAGTCTCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00773	114555	117365	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.399
SRR1783600	control	8.247
SRR1783602	moderate drought stress	9.232
SRR1811619	moderate drought stress	9.274

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.163
DRR006520	Root Summer glycyrrhizin high producing strain	11.344
DRR006521	Root Winter glycyrrhizin high producing strain	4.511
DRR006522	Root Winter glycyrrhizin high producing strain	4.524
DRR006523	Root Summer glycyrrhizin low producing strain	11.055
DRR006524	Root Summer glycyrrhizin low producing strain	10.401
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.410
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.078

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.965
SRR2868004	Drought Stress (root)	29.147
SRR2967015	Control (root)	31.462

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.547
SRR9715740	Leaf	10.832
SRR9715741	Leaf	9.735
SRR9715739	Root	3.582
SRR9715742	Root	14.459
SRR9715743	Root	10.648

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.794
SRR8749028	MeJA induced 9h	12.660
SRR8749029	MeJA induced 9h	5.436
SRR8749030	Uninduced	7.370
SRR8749031	Uninduced	5.050
SRR8749032	Uninduced	3.090

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.418
SRR8400027	Control - Root	15.663