Gene detail

Gene detail information of Glyur000773s00021457

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G50820.1	2.00E-144	photosystem II subunit O-2
NR	XP_003548008.1	0	PREDICTED: oxygen-evolving enhancer protein 1, chloroplastic-like [Glycine max]
Swissprot	tr\|P14226\|PSBO_PEA	0	Oxygen-evolving enhancer protein 1, chloroplastic (Precursor)
trEMBL	tr\|I1MNK0\|I1MNK0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA16G25860.1}

Sequence

Transcript Sequence

>Glyur000773s00021457.1
GATCCATGTTCCTCCTGATGTTGGGAGTTTGTGGTCGGATTTCCAAGTCACCANAAATCTGACTAGGAGAGTATCTTTATCCCAATTGAGAACCTTGCCACGTGGCAGCCNAGAGAACCATTGGCATTAGCCTCAATCATCCAATGAGAGATCACCTTATCCTATCCGTTTATCTTACTCATACCATAGCCACCAAATAATTGTGCCCCTCTCCACTCTCCACCAACACAAAAACGCTTCCAAACTCTGGTTTGTTTGGAGAGAACCCACAATAGAGTTAAGAGAGAAGAAGAGTGGTGGTAAGTGGTAACAAACAGCAGCTAGCAATGGCAGCATCACTACAAGCAGCCGCTACTCTCATGCAACCCAACAAGTTGGGGATGAATGGCCGCAGCAACACTTTGCAGCTCAAGTCATCTACTCACTCCATCTCTAAGGCNTTTGGCTTGGAACCCGTTGGAGCTAAGGCCACTTGCTCCCTTCAGGCTGATCTCAAGGACTTGGCTCACAAGTGTGTTGAAGCCACCAAAATTGCTGGGTTCGCCCTTGCCACCTCTGCTCTCGTTGTCTCTGGAGCAAGTGCGGAAGGTGTTCCAAAGAGGCTAACCTACGACGAAATCCAGAGCAAAACATACTTGGAAGTGAAGGGAACAGGAACAGCAAACCAGTGCCCAACCATTGACGGAGGAGTGGGCTCGTTCGCCTTCAAGCCAGGCAAGTACAACGCCAAGAAGTTCTGCCTGGAGCCCACATCGTTCACAGTGAAAGCAGAAGGCGTGACCAAGAACGCCCCACTNGAGTTCCAGAACACCAAGCTCATGACACGCTTAACCTACACCCTCGACGAGATCGAAGGACCCTTCGAGGTTTCCCCCGACGGNACCGTCAAGTTCGAGGAGAAAGACGGCATAGACTACGCCGCCGTCACGGTTCAGCTACCCGGCGGCGAGCGTGTTCCGTTCCTTTTCACCATCAAGCAGTTGGTTGCATCAGGGAAGCCAGAGAATTTCAGTGGGGAGTTTCTGGTTCCATCGTACAGGGGATCCTCTTTTTTGGACCCAAAGGGAAGGGGTGCATCCACGGGCTATGACAATGCGGTTGCTTTGCCTGCTGGTGGGAGAGGTGATGAAGAGGAACTTGCTAAGGAGAACAACAAGAGTGCTTCCTCTTCTAAAGGGAAGATCACGTTGAGTGTGACTCAGAGTAAGCCTGAGAGTGGTGAGGTTATTGGTGTGTTTGAGAGTATTCAGCCTTCTGACACTGATTTGGGTGCTAAAGCTCCTAAGGAGGTCAAGATCCAGGGTGTCTGGTATGCTCAGCTTGAGTCATAGACAGAAAGACACCTTCATTTCTTTTTCTTTCTTCTGCTTTTGTTTTTGTTGTAAACTCTGCTTTGTCCTTTGACTCAACTTTCAAGCACTGAGAGAGAGTATTATCGTGTTTGTATATTATATCGACTTCTTCCAATTACAATGCTTAAATTGTCGAGGCTAAAAATTACATTGTGTGTGCGACTTAGATATAGGATGCCTCAGAGAAGGAAGTTCCATTCACCCGAATGGAGAAACTTCTCTTAGTAGCTCCCCAGTTCCACCTCCAACGCCCTGAATCTAAAATCAAATAGAAACAAACTCGTGAATTTTAATTAACATATATATAGCAAAACATATATCCCACCGTTTGCTTCATTGAACATGAAAAAGTCTTCTGTACGGGCTTCAGCAGTGCAAGTTGTGAACAAAGGAAGCTCACGGGTTGAATTGGTGGTATATTACGCTGATGCCACTATATTATTTGCATATACAATCTACAATTTGGAAAATGCATGAATATTATACCATCTTGGTGATATAAAATGGTGGCACTTGTCCAATCTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00773	30733	33559	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015979 photosynthesis

GO:0042549 photosystem II stabilization

cellular_component

GO:0009523 photosystem II

GO:0009654 photosystem II oxygen evolving complex

GO:0016021 integral component of membrane

GO:0019898 extrinsic component of membrane

molecular_function
GO:0005509 calcium ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000773s00021457.1	PF01716.13	MSP	97	333	6.00E-112

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.221
SRR1783600	control	1.351
SRR1783602	moderate drought stress	1.167
SRR1811619	moderate drought stress	1.169

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.384
DRR006520	Root Summer glycyrrhizin high producing strain	1.373
DRR006521	Root Winter glycyrrhizin high producing strain	0.653
DRR006522	Root Winter glycyrrhizin high producing strain	0.609
DRR006523	Root Summer glycyrrhizin low producing strain	2.113
DRR006524	Root Summer glycyrrhizin low producing strain	2.101
DRR006525	Leaf Summer glycyrrhizin high producing strain	1031.313
DRR006526	Leaf Summer glycyrrhizin high producing strain	1024.218

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.642
SRR2868004	Drought Stress (root)	48.707
SRR2967015	Control (root)	31.224

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1098.394
SRR9715740	Leaf	1113.283
SRR9715741	Leaf	906.573
SRR9715739	Root	4.288
SRR9715742	Root	7.477
SRR9715743	Root	5.385

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.028
SRR8749028	MeJA induced 9h	5.496
SRR8749029	MeJA induced 9h	3.712
SRR8749030	Uninduced	2.505
SRR8749031	Uninduced	0.306
SRR8749032	Uninduced	9.711

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.027
SRR8400027	Control - Root	5.205