Gene detail information of Glyur000773s00021452 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G66600.3 | 0 | Protein of unknown function, DUF547 |
| NR | XP_003548906.2 | 0 | PREDICTED: uncharacterized protein LOC100816025 [Glycine max] |
| COG | YP_001998414.1 | 8.00E-15 | glycoside hydrolase 15-like protein [Chlorobaculum parvum NCIB 8327] |
| trEMBL | tr|K7MHC7|K7MHC7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G25820.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00773 | 7381 | 12404 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000773s00021452.1 | PF14389.1 | Lzipper-MIP1 | 89 | 176 | 6.40E-27 |
| Glyur000773s00021452.1 | PF04784.9 | DUF547 | 440 | 577 | 9.10E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.885 |
| SRR1783600 | control | 18.807 |
| SRR1783602 | moderate drought stress | 17.002 |
| SRR1811619 | moderate drought stress | 16.996 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.286 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.236 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.577 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.433 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.641 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.696 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.607 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.132 |
| SRR2868004 | Drought Stress (root) | 19.407 |
| SRR2967015 | Control (root) | 17.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.717 |
| SRR9715740 | Leaf | 8.722 |
| SRR9715741 | Leaf | 10.202 |
| SRR9715739 | Root | 7.911 |
| SRR9715742 | Root | 19.455 |
| SRR9715743 | Root | 19.104 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 14.954 |
| SRR8749028 | MeJA induced 9h | 19.953 |
| SRR8749029 | MeJA induced 9h | 13.233 |
| SRR8749030 | Uninduced | 3.332 |
| SRR8749031 | Uninduced | 2.437 |
| SRR8749032 | Uninduced | 2.870 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.954 |
| SRR8400027 | Control - Root | 51.246 |