Gene detail

Gene detail information of Glyur000772s00033984

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G78240.2	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
NR	XP_007141184.1	hypothetical protein PHAVU_008G174000g [Phaseolus vulgaris]
Swissprot	tr\|Q9C9Q8\|PMTT_ARATH	Probable pectin methyltransferase QUA2
trEMBL	tr\|V7B8K2\|V7B8K2_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW13178.1}

Sequence

Transcript Sequence

>Glyur000772s00033984.1
GCCGATTTTTTTTTCTCCCCCAAATTAACAATATTATTATAATGTCCTGAACGCGGGCAGTGTCTGTCTGCGTCCCGATCGGATCGGTACAAAATCTGCGTGCTCATGCTTGTAATAGACTCATCCTCCTCATTGTCTCCGTTTCTCTCTCACTTCCTCTCTCTTTAATTTCCAAAGCACCTTAATCATTCAACGAAGTGAGTGAGAGTGAGAGAGAGAAAGAAAAAAACCACTGAATCTACACAGAGAAATCCACTAACCACTAACCAGAGCCAAGAAACAGCTAGCGTCAGCTCTGTTGTTGTGTTTTGCGTTGCAAGCAATCAAAACGACAGCCACCCCATAACACTCATTACTACTGTTTCTCTTCTTCCCATTCTTCATCACCGACTCCCCAAACAAACAAGGAGGTTTGCGATTCCTCAACTGGAGCTGGATTCTCTAACGATGTTGGAATAACACTCACTTATGCTGGTTTCTTGGTGTGTTCATATAGTGTTGGTTACTTTACTAACATTAATAGTTGAAGATTGAAAGAATAAGATTGAAGTTCTCTGTGTGTGTTGTGTGTATTGGTTTAGAGAATGTCAAGGCCTCTACAGCGAGGTGTGTCTGGGATTCGTGTCCTTGATACTAGCCATGATGTCTCATGTGACTCCCAATCCAAAGATAAAACAGAAAAGGAAGATTTTGATAAGAGGGGTTCTTCAGATCACACCCCTCTATCATCACTGAGGTTTTTTCCCTTGAAGCTTCTTTTTGCAGATAATAACAATTCTCATTCCAAATATGGCAATGGCATCATGACTGAGAATGGTTTTGCTGCATCTGACCCCTTCATTGTTGGCACCCCAAGAAGCCGTTTCAAGTTGATGTTGCTTTCATTGAAGTTAAGTTTAGTGCTCTTAGTTGTTCTTGCTCTTGTTGGATCTTTTTGGTGGACGATAACCATGTCTTCCAAAATATCAAGGGGTCACGTTTACCATGGTTATAGGAGACTCCAAGAGAGGCTGGTTTCTGACCTGTTGGATATTGGCGAGTTTTCTCGCAGTGGTGCCGCTGCCTCGAGGGGGAAGGAATTGGAGTTCTGTTCCCCTCCTGAGTTGGAGAACTTTGTTCCTTGCTATAATGTTTCTGATGAGAGTGCTGTGGCTTTGGGGAATTCTGAGGGAAGTGTGGTTGAAAGGCAATGTGAGTATGAGCTCAGGCAAAGTTGTTTGGTTCCACAACCAGTGAATTACAAGATTCCTCTAAGGTGGCCTACTGGAAGAGATGTTATCTGGGTTGCTAATGTGAAAATCACTGCACAGGAGGTTCTTTCTTCTGGAAGCTTGACCAAGAGGATGATGATGCTGGATGAAGAGCAAATCTCCTTTCGTTCAGCCTCTCATATGTTTGATGGAGTTGAAGACTACTCGCATCAGATTGCTGAAATGATTGGACTTAGAAATGAATCTTACTTCATACAAGCTGGGATTCGGACCATACTAGACATAGGTTGTGGCTATGGTAGCTTTGGAGCGCACCTCTTTCACAGTCAACTTTTGACAATGTGCATTGCAAACTATGAGCCTTCTGGTAGTCAAGTTCAGCTCACTCTCGAGAGGGGTCTTCCTGCTATGATTGCTTCTTTCACTTCAAGACAGTTGCCATATCCATCTCTGTCCTTTGATATGTTACATTGTGCAAGATGTGGCATTGATTGGGACCAGAAAGATGGTATTCTATTGATCGAAGCTGATAGACTTTTGAAACCGGGTGGATACTTTGTCTGGACGTCACCACTTACAAATGCTCGTAACAAAGAGAATAAAAAAAGGTGGAAGTTTGTGCACGATTTTACAGAAAATCTTTGCTGGGACATGTTGTCGCAGCAAGATGAAACCGTTGTATGGAAGAAAACTAGCAAAAAGAGTTGCTATGCTTCAAGAAAGCATGGTTCTAGCCCTTCTTTGTGTGGTAAAGGTCTTGATATGGAATCTCCATATTATCGAGAACTGCAAAACTGCATAGGAGGAATACAGAGCAGCCGTTGGGTTTCAATTGAAAAAAGGGGAAAATGGCCCTCTCGGGCTAATTTGAATGTGAATGAGTTGGCAATACATGGGTTGCAGTCTGATGAATTTGCGGAGGACTCTGACAGCTGGAGAACAGCAGTCCAAAATTATTGGTCACTCTTGTCCCCTATAATATTTTCTGATCATCCAAAGAGGCCTGGTGAAGAAGACCCGTCACCACCTTACAACATGTTCAGAAATGTGCTAGACATGAATGCTCATTTTGGTGGCTTTAATTCTGCATTGTTGCAAGCCAGAAAGTCTGTGTGGGTCATGAATGTAGTCCCAATAAGTGGACCCAACTATCTTCCCTTGATCCACGACAGAGGTTTCGTTGGCGTTCTGCATGATTGGTGCGAGGCCTTTCCAACATACCCAAGAACCTATGACTTGGTGCATGCAGCAGGACTTCTATCCCTTGAAACATCCCAGCAGCGCAGATGCACCATGCTTGATCTTTTCATTGAAATCGACAGGTTACTTCGCCCAGAGGGTTGGATTATAATTCGTGATACAGTTCCTTTAATAGAATCAGCTAGAGCTCTAACAACACGACTGAAGTGGGATGCTCGAGTGATAGAAATTGAAAGTGACAGCGATGAGAAACTCCTGGTGTGCCAGAAACCTTTCTTTAAGAGACATGCAAGCTAATTAATTTGAAGTCATGAAGAAATTAGACCATATATTATAAATATAGTTCATTTCCATAGTGTTCATTTACAATATCATAAAGCTCCACCATACAAAAATGGGGATTGAAAATTTTGGACAGAGAAGAAGATAAAAACAATAGAGGAAAAGGTGTATGATGTATCCTTGTCAGTGATACCACCTACATCTCCTATGTAGCCGTAAGGTGTGCATAGGACCATGTAATTACCAAACAAGCAACAGAGCAGATGACAAAGAATACTGCAAGATTTACATTTTTATGTGCTGTCTAATTAGAGTTACATTACATAAACACAAACATTGTTGGGAAGAAAATGATAGAATAAGTTATTGCTCTTTGCTGTGGTGTATAAAAGGCTCATCAGTCCATTCCCCCTTTTATATTATAGAATTATTTTTCTGTTATCCTTTTATAGGTTTTTTAATATCTCCTATATAAGCTCGGGAAAATTGTACTAGATAGCTTGTAAAATCACGTTCTTCATCAGTCCAATATAGAAGGTACA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00772	30680	37732	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0008168 methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000772s00033984.1	PF03141.11	Methyltransf_29	177	699	6.40E-149
Glyur000772s00033984.2	PF03141.11	Methyltransf_29	202	266	1.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.058
SRR1783600	control	22.211
SRR1783602	moderate drought stress	15.185
SRR1811619	moderate drought stress	15.302

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.546
DRR006520	Root Summer glycyrrhizin high producing strain	14.506
DRR006521	Root Winter glycyrrhizin high producing strain	55.787
DRR006522	Root Winter glycyrrhizin high producing strain	54.372
DRR006523	Root Summer glycyrrhizin low producing strain	18.335
DRR006524	Root Summer glycyrrhizin low producing strain	18.421
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.076
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.033

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	18.231
SRR2868004	Drought Stress (root)	19.223
SRR2967015	Control (root)	18.632

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.110
SRR9715740	Leaf	12.446
SRR9715741	Leaf	18.253
SRR9715739	Root	12.361
SRR9715742	Root	70.702
SRR9715743	Root	58.016

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	162.241
SRR8749028	MeJA induced 9h	125.551
SRR8749029	MeJA induced 9h	87.722
SRR8749030	Uninduced	64.927
SRR8749031	Uninduced	20.275
SRR8749032	Uninduced	20.338

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	32.844
SRR8400027	Control - Root	45.435