Gene detail

Gene detail information of Glyur000771s00029725.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G07960.1	0	Cellulose-synthase-like C12
NR	XP_004501496.1	0	PREDICTED: probable xyloglucan glycosyltransferase 12-like [Cicer arietinum]
COG	YP_004055443.1	6.00E-67	family 2 glycosyl transferase [Marivirga tractuosa DSM 4126]
Swissprot	tr\|Q9ZQB9\|CSLCC_ARATH	0	Probable xyloglucan glycosyltransferase 12
trEMBL	tr\|A0A072V1K1\|A0A072V1K1_MEDTR	0	Xyloglucan glycosyltransferase {ECO:0000313\|EMBL:KEH35854.1}

Sequence

Transcript Sequence

>Glyur000771s00029725.1
CAAAGACGTGTTGAGCTGTTACCCTTTGTATGTCCACTTTCCATCTTTCAACATTTCATTCCCTCTCTTTGAGTCCTTTTCCTATTTAGGTTTTGAAACCCCGTTTATTATTGCAACAAGGTGTAGTTGAGTGGGTGCTGTTTTGGACTTCTCCCATAGGTCACAGCGTTCTTCTTGGTCTTCCTCTCTGTGCAAANCAGTTTCACGTATAACTTTGCTCCGAATGTCACAATTGCTTAGAGACGCATTGCTTTGCTTTCTTCCTCCACGCGTCTGTCACCGCTACCATTTCTCGTTTTCATTTTGTTTTCTGACAATGAGATCAAGGTTGTAGTCTTTTCCTCCTTCCTTTCTGATTCTTTTTTTTTTTCTGCGCCGAGGGTTAAAAAAAATTAAAAAAGAAAAGGAAAAAATAAAAATAAAAGGGACACTAGTTTCTTGAGGTGGGTTTCTGAGATCAGAACCGAAAATGGCACCCTTGTTCGATTGGGGGGTGAAAGAGAGCCATAGGGGAACCCCAGTGGTGGTGAAGATGGAGAACCCAAATTGGTCCATGGTTGAACTCGAGGGTCCTTCCGAGGAAGACTTACTCATCACAGATCCTTCAAGAAGAGACAAAGGAAGAGGCAAAAACGCGAAGCAACTCACTTGGGTCCTTCTCCTNAAGGCTCACAGAGCCGCGGGTTGCTTAACCTCCCTCGCCCCTGCATTGTTGGGGCTTGTCTCCGCCGTGAAACGCCGCGTTGCCTCCGGGAGAACCGACGCCGACAACGACAACGACGACGGAGGTGGAAGGGAGGAGGAGAACCCCAACGTGAGGAGCAGGTTCTATTCGTGTATTAAGGTGTTTCTGTGGCTGTCGGTGCTCATGTTGTGTTTTGAGGTGGCTGCGTATTTCAAAGGTTGGCACTTTGGTGGTGCACCACATCTTCAGTTGGAGTATTTGCTTTGGGCACCCGCATTTGGGGTCAAGGATTTCTTCGATTGGCTTTATGCGAGGTGGGTTTTGGTTCGGGTGGAATACCTTGCTCCACCATTGCAGTTCCTCGCCAATGCGTGTATTGTGCTGTTCCTTATTCAGAGTTTGGATAGGTTGGTTCTCTGTTTGGGTTGTTTCTGGATCCGGTTTAAGAAGATCAAACCCGTTCCGAAAGGTGGTGATGTAGATCTCGAATCTGGGGAGAAAGGTTTCTTCCCCATGGTACTAGTGCAGATCCCCATGTGCAATGAGAAAGAGGTTTATCAGCAATCAATTGCTGCCGTTTGTAATTTGGATTGGCCAAAGTCCAAGTTGCTGATTCAGGTTCTAGATGATTCGGATGACCAAACAGCACAGTTGCTGATCAAGGAGGAGGTCCAAAAATGGCAACAAGAGGGTGCCAACATTCTCTACCGGCACCGGGTGATTAGAGATGGGTACAAGGCCGGTAATCTGAAATCTGCCATGAATTGTAACTATGTGAAAGACTANGAGTTCGTTGCAATTTTTGATGCTGACTTTCAGCCTACACCTGATTTCCTTAAAAAAACTGTTCCTCATTTTAAGGAGAATGAGGAATTAGGGCTTGTTCAAGCAAGATGGTCCTTTGTGAACAGGGACGAGAACCTGCTAACAAGGTTGCAGAATATCAATTTGACTTTCCATTTCGAGGTCGAGCAGCAAGTGAATGGGGTTTTCATTAATTTCTTTGGGTTCAATGGGACTGCTGGGGTGTGGAGAATAAAGGCTTTGGAAGAAGCTGGTGGTTGGTTGGAGAGGACCACTGTGGAGGACATGGACATTGCCGTTCGAGCTCATCTTCATGGCTGGAAGTTTATTTTCCTCAATGATGTTGAGTGCCAGTGTGAGCTACCTGAATCTTATGAAGCTTACAGGAAACAGCAGCATAGATGGCATTCTGGGCCAATGCAGTTGTTCCGCCTTTGTTTGCCTGATATCATACGGTCCAAGATAAGCATATGGAAGAAATTCAACATGATATTTCTCTTCTTTCTTCTTAGAAAACTGATATTACCATTCTATTCATTCACCCTATTCTGTATAATCCTGCCCATGACAATGTTCGTACCGGAGGCCGAGCTTCCTGCATGGGTTGTTTGTTACATCCCAGCCATCATGTCATTTCTCAACATTCTTCCAGCTCCAAAGGCCTTTCCCTTCATTGTTCCTTATCTCCTATTTGAGAACACCATGTCAGTTACCAAATTCAATGCCATGATCTCTGGCCTATTCCAGCTCGGCAGCGCGTACGAGTGGGTAGTAACCAAGAAATCGGGCCGTTCTTCGGAGGGCGATCTGGTTTCATTGATTCAGAAACCAAAGCATCAGAGAGGGGCCTCGGCACCTAATCTCGAGGAAATGAAAGAGGAAATTCGAAGGCAGGAGGAAAAGGTGTCTAAGAAGAAGAAGAGAAAGCATAACAGAATATATGTGAAGGAGCTTGCTTTGGCCTTTCTACTTCTAACAGCCTCAGCAAGGAGTCTCCTCTCTGCACAAGGGATCCACTTCTACTTCTTGCTATTCCAGGGCATTTCATTCCTCTTAGTTGGTCTAGACTTGATTGGTGAACAGGTGGACTGAAAAACAAATAACAGAAAATCTGTACACTGTAGAGAGAGTTACACGCATGAATTATTGTACACGGAGAAAGCAAGGGTGGAACAGCCATGCTCTATGAATCACTGGGCACTGGAAAGTATAGAGGACCCAGANTGCTGCTTTTTTTTTTTTTTGCTCATGCTCCTCCCTCCAGGCTCGTAATTCAACTCCACCCAATATGAGAGAGTATATTGTGTTGTTATGGATTGAAAAGATGATTTTGATTTGGACACGGGTAGGGCTTTTTCATTCGATGTGTATGTTTAGTTTACCTTTTTTTTTAATTCATTTTTTGTAATTTTATGTGGATTCTTTTTCTTGCCGGATCAATTCTTTTTTTCTTTGTAAGAAAAAATTTGAGTTCAAAAATTTTATGGACAGGAACAACATTATATTCTTTTTCTTGATTCTACTTACTCCACCG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00771	76840	80487	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000771s00029725.1	PF13641.1	Glyco_tranf_2_3	244	475	1.10E-35

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.864
SRR1783600	control	8.972
SRR1783602	moderate drought stress	4.554
SRR1811619	moderate drought stress	4.481

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	47.792
DRR006520	Root Summer glycyrrhizin high producing strain	47.069
DRR006521	Root Winter glycyrrhizin high producing strain	1.624
DRR006522	Root Winter glycyrrhizin high producing strain	1.622
DRR006523	Root Summer glycyrrhizin low producing strain	77.111
DRR006524	Root Summer glycyrrhizin low producing strain	76.823
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.489
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.552

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	28.251
SRR2868004	Drought Stress (root)	23.742
SRR2967015	Control (root)	32.973

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	56.560
SRR9715740	Leaf	44.800
SRR9715741	Leaf	48.589
SRR9715739	Root	84.617
SRR9715742	Root	232.267
SRR9715743	Root	197.301

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	183.190
SRR8749028	MeJA induced 9h	174.108
SRR8749029	MeJA induced 9h	167.482
SRR8749030	Uninduced	172.766
SRR8749031	Uninduced	106.060
SRR8749032	Uninduced	158.406

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	21.836
SRR8400027	Control - Root	66.320