Gene detail

Gene detail information of Glyur000771s00029724

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G58440.1	0	FAD/NAD(P)-binding oxidoreductase family protein
NR	XP_004501491.1	0	PREDICTED: squalene monooxygenase-like isoform X1 [Cicer arietinum]
COG	YP_004346032.1	2.00E-101	Squalene monooxygenase [Fluviicola taffensis DSM 16823]
Swissprot	tr\|O48651\|ERG1_PANGI	0	Squalene monooxygenase
trEMBL	tr\|I1K897\|I1K897_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G05200.1}

Sequence

Transcript Sequence

>Glyur000771s00029724.1
CAAATCCAAACACACTCGAAATTACATTAGTTAATTTTTCAATTTACGTTGCCAAATCCAGCTAAGTGAGTATGCTATTTCGGCCATTTTAACGGGCCAGTTTCGTCTACATATAAAATGTACACGACCCACCTCAAGTTCCTCGGGGGGTTCTGTTAAGCCACGCAAACAAACACAGCCTTTTCAATATTCACATTGCGGCCACTAGGCCAGCGAAGCAGATATAGAGAGAGAGAGAGGGAACACAACACACCGCACCATCGTCTCCGTTGCGAAGAGGTTCTTCGAAATGATGGACCCCTACGCGCTTGGATGCATCATATGCTCCGTGCTGAGCCTCGTTGCGCTCTACAATCTGGTTTTCGTACGGAAGAAATATCCCGCTTCTTCCGCTGCCGCGACTCCGAGCACGGAGAACATCACAACCGCCGCCGGAGAATGCAGATCCTTCAACNGCCACGGCGACGTTGACATCATCATTGTTGGAGCAGGTGTCGCTGGCTCTGCTCTCGCTCACACTCTCGGCAAGGATGGACGTCGAGTACTTGTCATTGAAAGAGATCTGAATGAACCAGACCGAATTGTTGGAGAGTTGCTACAACCTGGAGGCTATCTCAAGTTAATTGAGCTGGGACTTGAAGATTGTGTCGAGAAAATTGATGCTCAGCAAGTGGTTGGTTATGCTCTTTTCAAGGATGGGAAACACACACGACTCTCTTATCCCTTGGAAAAGTTTCACTCAGATATTGCCGGCAGAAGCTTTCACAATGGGCGTTTCATTCAGAGGATGAGAGAGAAGGCTTCCTCCCTTCCCAATGTACGATTGGAGCAAGGAACAGTGACTTCCCTACTTGAAGAGAAGGGGACAATTAAAGGTGTGCAGTACAAAACGAAAGATGCTCAAGAATTATCAGCATATGGTCCTCTTACCATNGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGTTCTCTTTGTAATCCTAAGGTAGATGTTCCCTCTTGTTTTGTTGGCTTAGTTTTGGAAAATTGTGAACTTCCATGTGCAAATCATGGCCACGTCATACTGGGAGATCCTTCNCCAGTTCTGTTCTATCCCATAAGTAGCACAGAAATTCGCTGTCTGGTGGATGTTCCTGGTCAGAAAGTTCCATCTATTTCCAATGGTGAAATGGCGAAGTATTTGAAAACAGTGGTAGCTCCACAGGTTCCCCCTGAGCTTTATGATGCTTTCATAGCTGCAGTGGACAAAGGCAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGCTCCTTATCCCACTCCCGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGCCATCCCCTAACTGGGGGTGGAATGACTGTGGCATTATCTGATATAGTAGTGTTGCGAAATCTTCTCAGGCCTTTGCGTGACCTGAATGATGCACCCAGCCTTTGCAAATACCTTGAATCCTTTTATACCTTGCGTAAGCCCGTGGCATCCACCATAAACACTTTGGCAGGAGCACTTTACAAGGTTTTTTGCGCATCACCTGATCCTGCGAGAAAGGAAATGCGTCAAGCTTGCTTCGATTATCTGAGTCTTGGAGGTCAATTCTCGGAAGGGCCAGTCTCTTTGCTTTCAGGATTAAACCCTCGGCCCCTGAGCTTGGTTCTTCATTTCTTTGCCGTTGCAATATATGGCGTTGGCCGCTTACTGCTACCATTTCCTTCCCCTAAACGCTTGTGGATTGGAGTCCGATTAATCACTAGTGCATCCGGAATCATCTTGCCCATAATTAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACAGTTCCAGCCTATTACAGAACTCCCCCGGCTGCATAGAACTGAATTTTAGTGAATACGTCTTTAAAAGTCAAGATAAGCTTGCACTTGTTTTCTTATCAGAAATGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00771	67117	71078	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00511	SQLE, ERG1	EC:1.14.14.17	Steroid biosynthesis	map00100
			Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0004506 squalene monooxygenase activity

GO:0016491 oxidoreductase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000771s00029724.1	PF13450.1	NAD_binding_8	64	90	3.00E-05
Glyur000771s00029724.1	PF08491.5	SE	212	483	1.00E-123

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.378
SRR1783600	control	18.406
SRR1783602	moderate drought stress	17.783
SRR1811619	moderate drought stress	17.412

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.391
DRR006520	Root Summer glycyrrhizin high producing strain	15.764
DRR006521	Root Winter glycyrrhizin high producing strain	0.705
DRR006522	Root Winter glycyrrhizin high producing strain	0.692
DRR006523	Root Summer glycyrrhizin low producing strain	27.291
DRR006524	Root Summer glycyrrhizin low producing strain	27.634
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.488
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.510

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	40.841
SRR2868004	Drought Stress (root)	29.093
SRR2967015	Control (root)	28.554

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.788
SRR9715740	Leaf	19.091
SRR9715741	Leaf	15.744
SRR9715739	Root	13.460
SRR9715742	Root	29.389
SRR9715743	Root	28.767

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	77.717
SRR8749028	MeJA induced 9h	63.178
SRR8749029	MeJA induced 9h	93.786
SRR8749030	Uninduced	65.616
SRR8749031	Uninduced	37.896
SRR8749032	Uninduced	44.554

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.183
SRR8400027	Control - Root	27.737