Gene detail

Gene detail information of Glyur000771s00029717.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G34630.2	6.00E-142	geranyl diphosphate synthase 1
NR	XP_004509097.1	0	PREDICTED: solanesyl diphosphate synthase 3, chloroplastic/mitochondrial-like [Cicer arietinum]
COG	YP_007108464.1	1.00E-82	solanesyl diphosphate synthase [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q5HZ00\|SPS3_ARATH	0	Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|K7KPC0\|K7KPC0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G21570.2}

Sequence

Transcript Sequence

>Glyur000771s00029717.1
GGGGTATAGAGAAAAAGTAAAAAAAAAAAACCTCTGAGACAGTGAGAGAGCGTGAGACCATTTTTGTTATGATTTCATATTTCCCTTTCTTCTTCCTCCTCGCAATGCCGCCACAGCAGCCCAGTCTGCCGCCGCAGCATACGTCCTCGACATCGCGCCGGAGATAAACGCCATCGCAGCCGTTTTTTTCTTCTTCGTGCGAGTCCTCTTCTGGTTCTCCTGGACCCAGCTCAGTGCTCTTCTTCTTCGCGCGAGTGCCTCTTCTGGGTTTGTTGTGTGTTCTTCTGCTGTTCCTTTCTGCTTCAATGGTTTTGAGCTCGGTTTTGGGAAAATTGAAAAATCAAGATCACATGGTGGAGCTTTGCCGTCGTCACCACATTACATTACATTAAACACAACCGCATTCATTCGGTGACTGATGGTAGTCTGGTCTCGCTTCCGTAGCAAAAAATAGGAGTTTGCTCTTTGCTGTGCGTATATAATTATCTCTTTTGATTTGACTGCTCCTATAATTTCCACGTCTCCGTAGCAGCCAAATACGATGCTGTTTTCTAGAATATCGAGAAATCTCAGAGGCAGCTTCAACGGATTTCGGTGGTTTCTGTCCACTGGAGACCACAACCACCGCTTTCTTCTCTCGCATAATTCTCACTCACGTCGAGACTCTACTCACCAGGTTATGAGAAATTTAGCTTTTACAAAGGGCGTGCCAGCATTGTATAGTAGTAGATATCAAATCCATCACCAAAGCAGCACCATGGTTGAGGATGAACTTGATCCGTTTTCACTGGTCGCTGATGANCTATCACTTCTTGGTAACAAGCTGCGAGAAATGGTGGTGGCTGAGGTTCCTAAGCTTGCCTCAGCTGCNGAATACTTCTTCAAAATGGGGGTAGAAGGAAAAAGATTTCGTCCTACAGTTTTGTTGTTAATGTCAACAGCATTANATCTACCAATGCCCAAAGCACCTCCTCCTATTGACCTAGGGGGTGCTATGACAACTGACCTACGTTCAAGACAACAACGCATAGCNGAAATAACAGAGATGATCCATGTGGCAAGCCTTCTCCATGATGATGTATTGGATGATGCAGATACCAGGCGTGGTATTGGTTCATTNAATTTTGTTATGGGCAATAAGTTGGCAGTATTGGCTGGGGATTTTTTGCTTTCTCGGGCTTGTGTTACTCTGGCCTCTTTAAAGAACACAGAGGTTGTATCNTTGTTGGCAAAAGTTGTAGAGCATCTTGTAACAGGGGAGACCATGCAAATGACTACAACATCTGATCAACGGTGTAGCATGGAATATTATATGCAAAAGACATACTACAAGANTGCATCGTTAATATCAAACAGTTGCAAGGCAATAGCCATCCTTGCAGGGCAAACAGCTGAAGTTGCAATGCTTGCTTTTGATTATGGAAAAAATCTGGGTTTGGCATTTCAATTGATAGATGATGTGCTTGATTTCACAGGCNCATCAGCTTCCCATGGAAAGAGTTCTTTATCAGACATTCGCCATGGAATTGTTACAGCTCCAATATTGTTTGCNATGGAGGAGTTCCCTCAGTTGCGTGNAATTGTTGAAGAGGGCTTTGAAAACCCTGATAATGTCAATATTGCTCTGGAGTATCTTGGAAAGAGCCGAGGTATACAAAGGACAAAGGAGCTAGCCATGAAGCATGCTAACCTTGCAGCTGCAGCAATTGATTCCTTCCCTGATAGTGATGATGAGGAAGTAAGAAAATCAAGGAGAGCCCTAATAGATCTCACTCGCATTATCATTACAAGAACAAAATGAANGAAAGGCTTCTTTTCCCCCTTTTTCTTTTTCTTTTTTGGTAGCTATAAGAAGGCTCTCATAGTAAAATCAGCAGCTAACAGTTGTTCTGTTGCCATTTTTCAATTTTCTGTCATTGTTCCCCGAATCCAGAAGGTTTGGGGGAAATAAGTTCTTTCTAGGATTAATGTCATCATTCCTTTTTATGTATTATTTTATACTGATATAAATAAGTACTTATTTATAAGTACTAAAAACCCATNAGGTAAGGTAGTGACATACAAATTTGATTTTTTTTTATGTATAAAAAAGAACAGAAGAATTTGTTCATGCAGCACAAGATGGGAGAAGGGTCTTTACAACTCTTTGTCGGTCCTATTGGACATGCATATACTGAAGATGACATGATTAAGGNATGACAAAATTAAGGTAGGTTATACAAATGAAACCAAAAGAGAAACTCCTACAATAACTATTTGATGCAATACTTATACATTTGCTTCCTCCTTTGCTGCAAAAGCAGTGTGTCCTTCCTGCCAAAGAATCTCATGATTCTTNCAATCACTATTTGTATAAGCACTTCACACATTGGGCATGCTAGTGTGGGCCATTCCCTTTGCAAACTGCTAGTGAAATCACATATCTGTTTTGACAAAAAAAAAATCACAAAATCTGTCATCCCATATACACAGACAAGTTAGTGTCAAATTAGTCATCATAGAAATATAATCCTTATTTTTGTGCTGTTGTCGCGGGCTCAATGTCGTGGTTGACCAGAGTCGTTACGATGTTCGGTGGTCTCTTCTTCGATCTGCCGGTGCCAGCGTGGTCCTGTCCGAGCTGCTATGGTCATCTCTGGAACGCGGATACAAAGCCTAGTTCACCTTCTTTGGGTTTTCTGAATAGCGACATGTGGGTTAAATTTGTGGAGGTAGAAGGTTCAGAATGCCCCAAATGGGCGTTTTCCCAACCCACCTCAAAAGTTACATTTTACATGTCTGTATTCTTTTTTGGTGTACTTGGTTCTGCTTATCTGTGGTCTTTTGGTGTTTGGCANCTTTGATTTTGTTTTTTGTGCTTTGTTTGTTTTCCTTGTCTNTTGTTTGTGTCGGCAGCGTGTCTTGGCAGAATTGTTGTATTTGTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00771	18571	28245	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14066	GPS	EC:2.5.1.1	Terpenoid backbone biosynthesis	map00900

Gene Ontology

biological_process
GO:0008299 isoprenoid biosynthetic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000771s00029717.1	PF00348.12	polyprenyl_synt	118	359	2.20E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.934
SRR1783600	control	8.156
SRR1783602	moderate drought stress	7.108
SRR1811619	moderate drought stress	7.052

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.541
DRR006520	Root Summer glycyrrhizin high producing strain	10.566
DRR006521	Root Winter glycyrrhizin high producing strain	10.237
DRR006522	Root Winter glycyrrhizin high producing strain	9.837
DRR006523	Root Summer glycyrrhizin low producing strain	13.867
DRR006524	Root Summer glycyrrhizin low producing strain	13.801
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.668
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.856

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.946
SRR2868004	Drought Stress (root)	14.541
SRR2967015	Control (root)	14.745

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	18.050
SRR9715740	Leaf	27.989
SRR9715741	Leaf	22.229
SRR9715739	Root	9.036
SRR9715742	Root	10.495
SRR9715743	Root	8.965

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.152
SRR8749028	MeJA induced 9h	14.470
SRR8749029	MeJA induced 9h	11.054
SRR8749030	Uninduced	7.755
SRR8749031	Uninduced	5.160
SRR8749032	Uninduced	5.348

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	15.664
SRR8400027	Control - Root	16.365