Gene detail

Gene detail information of Glyur000770s00019677.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G79810.1	2.00E-137	Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein
NR	XP_004516308.1	0	PREDICTED: peroxisome biogenesis protein 2-like [Cicer arietinum]
Swissprot	tr\|Q9CA86\|PEX2_ARATH	9.00E-179	Peroxisome biogenesis protein 2
trEMBL	tr\|G7LFV7\|G7LFV7_MEDTR	0	Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313\|EMBL:AET01453.1}

Sequence

Transcript Sequence

>Glyur000770s00019677.1
ATGAGTAGCAGTACTAGTCTACCTGCAGTTCCACCACAAGATGCCTGGACTCTCACTTCCCAACACTTGCTCCCTCGCTGGGAATCCCTTTCCCTCTCTCACTACCACCAGGTTGATGCAGCAAGACTGGATGTTGAAATGTCTGCCATGTTGAAAGAACAGTTGGTTAAAGTGTTCTCTTTAATGAAGCCAGGAATGTTATTTCAGTATGAAGCTGAACTCGATGCTTTCCTTGAGTTTCTTATTTGGCGGTTCTCAATCTGGGTGGATAAACCAACTCCTGGTATTGCTCTCATGAATCTGAGGTATAGAGATGAGCGTGCAGTGGAATCAAGAGAAAAAGTCAGAACTGGTCTGGAGGGACCTGGACTTACTGTTGCTCAGAAGATCTGGTATTGTGTTGCCACTGTTGGTGGTCAGTATATTTGGGCTCGCTTACAATCCTTCTCGGCTTTTCGTAGGTGGGGTGATACTGAGCAGAGACCATTGGCACGACGTTTATGGATCTTGATACAAAGGATAGAAGGAATTTATAGAGCTGCTTCATTTGGAAACCTGTTGATATTTCTTTGCACGGGAAGATATCGAAATCTTATTGAAAGAGCCTTACGAGCTAGGCTTGTATATGGGAGCCCAAACATGAATCGTGCTGTTAGCTTTGAGTATATGAACCGACAATTAGTTTGGAATGAATTCTCGGAAATGTTATTGTTGCTTCTTCCTCTTCTTAATTCATCATCTGTGAAAAATCTCCTTCGACCTTTTTCTAAGGATAAATCATCAAGTTCGGCTGAGGATGGCACTGCATGTCCCATTTGCCAGGCTACTCCAACCATTCCTTTTATTGCTCTACCTTGTCAGCACAGATACTGTTACTACTGTCTTCGGACACGATGTGCTGCTGCTCTGTCATTTAGGTGTTCCAGGTGCAGTGAGCCAGTTATTGCTATGCAACGCCATGGTGGTGTCTCCACGGAATAAATGTTACCAAGAGAGAAGTAAATTATCCTAGGTTTAGGGAGCATTTGATCTACATAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00770	75392	78714	-

Gene family

Gene family	subfamily
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000770s00019677.1	PF04757.9	Pex2_Pex12	44	250	3.10E-41
Glyur000770s00019677.1	PF00097.20	zf-C3HC4	270	310	6.30E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.385
SRR1783600	control	14.902
SRR1783602	moderate drought stress	14.877
SRR1811619	moderate drought stress	14.445

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.652
DRR006520	Root Summer glycyrrhizin high producing strain	16.286
DRR006521	Root Winter glycyrrhizin high producing strain	42.831
DRR006522	Root Winter glycyrrhizin high producing strain	40.577
DRR006523	Root Summer glycyrrhizin low producing strain	16.665
DRR006524	Root Summer glycyrrhizin low producing strain	16.856
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.696
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.292

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.247
SRR2868004	Drought Stress (root)	26.355
SRR2967015	Control (root)	25.390

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.495
SRR9715740	Leaf	34.052
SRR9715741	Leaf	40.498
SRR9715739	Root	15.265
SRR9715742	Root	18.716
SRR9715743	Root	17.189

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.881
SRR8749028	MeJA induced 9h	26.445
SRR8749029	MeJA induced 9h	21.036
SRR8749030	Uninduced	25.198
SRR8749031	Uninduced	10.736
SRR8749032	Uninduced	13.312

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.101
SRR8400027	Control - Root	20.602