Gene detail information of Glyur000770s00019676.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25030.2 | 2.00E-23 | RING/U-box superfamily protein |
| NR | XP_004516309.1 | 9.89E-63 | PREDICTED: LON peptidase N-terminal domain and RING finger protein 2-like [Cicer arietinum] |
| trEMBL | tr|I1MME7|I1MME7_SOYBN | 2.00E-60 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G15380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00770 | 72981 | 73793 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000770s00019676.1 | PF13920.1 | zf-C3HC4_3 | 221 | 263 | 1.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.305 |
| SRR1783600 | control | 9.706 |
| SRR1783602 | moderate drought stress | 8.062 |
| SRR1811619 | moderate drought stress | 7.895 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 34.993 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.936 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.136 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.807 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.760 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.312 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 20.187 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.698 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.023 |
| SRR2868004 | Drought Stress (root) | 12.135 |
| SRR2967015 | Control (root) | 20.746 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.244 |
| SRR9715740 | Leaf | 15.710 |
| SRR9715741 | Leaf | 11.827 |
| SRR9715739 | Root | 22.796 |
| SRR9715742 | Root | 46.655 |
| SRR9715743 | Root | 37.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 13.488 |
| SRR8749028 | MeJA induced 9h | 16.142 |
| SRR8749029 | MeJA induced 9h | 17.946 |
| SRR8749030 | Uninduced | 19.912 |
| SRR8749031 | Uninduced | 7.433 |
| SRR8749032 | Uninduced | 15.041 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.498 |
| SRR8400027 | Control - Root | 24.788 |