Gene detail

Gene detail information of Glyur000769s00037465

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT3G46610.1	Pentatricopeptide repeat (PPR-like) superfamily protein
NR	XP_003548551.1	PREDICTED: pentatricopeptide repeat-containing protein At3g46610-like [Glycine max]
Swissprot	tr\|Q9SNB7\|PP264_ARATH	Pentatricopeptide repeat-containing protein At3g46610
trEMBL	tr\|V7B5H9\|V7B5H9_PHAVU	Uncharacterized protein {ECO:0000313\|EMBL:ESW12830.1}

Sequence

Transcript Sequence

>Glyur000769s00037465.1
ATGATTCACACTTTAAGCACCTTACCCTCCAGAGGTGGCTTCGTTTTAGGTTCTTCCTGTGTTGTCACTGATCTGAATAGAAAGAGGAGGAGGATGAAGTTGGGTTTTGTTTACTCCATTTCTCACAGTACAAGTTTTGGTGTTTTTCAATGTTTAACAAGTTCAGGTGGTGGTGGTTATTATGGGAATAGTACTGTAGTGTTTTCTGGATACCCAAACCCAAAATTTGATTTGAGGTGTGGGTTTTTGTTAGGTTACCCTGGACTCAAATATGATTATACACTTTTGAAACCAAACAAGAGTCATGTTGGAGACTTGGCTCTTCCCCCCTTGGGGTGGGCNTTGGAGGAGGAAGAAAATACTAATTCCACTGACCACACATCAGTTAATGGTGAGTCAGAGGGTATTAACCCTTCAAATTTGGATCCGGTTCGAGACGGTTACTACTGTGAGCAAGAGATGCGTGGGGATGACAACAGCGAGCACGAGGAAGCTGTGGGGGATGAATTGGTTGAGGAAAAGACTAATTCTACTGACCACACATCAGTTAATGGTGAGTCAGAGGGTATAAACTCTTTGAATTCGGATCCGGTTCGAGATGGTTACTACTGTGAGCAAGAAATGCGTGGGGATGACAACGGCNAGGGTGAGGAAGATGATGACAAGGAAGGGTATTACAATGGTAGGGTTGATGTTAGAGANCTTGCCAATAGCTTGCAGACTGCTAAGACTGTGGAGGATGTGGAAGAGATTCTCAAGGACAAGGGGGACTTGCCCCTTCAGGTGTATTCGACCATAATTAGTTGGTTTGGTAAACAAAAGAGAATGGATTCCGCGTTGATTCTTTTCGATTGGATGAAGAAGAGGAATGTGGAGACCAATGGCTCTTTTGCCANGAACATTTTCATATATAACAGTCTATTAGGTGTAGTTAAACAATGTGAACAATTTGAAGAAATGGAAGCCATTCTGAGTGAAATGGCTCGAGATGGAATGGCCTATAATGTTGTGACGTATAATACCTTGATGGCAATTTACATTGCGAAAGGAGAAGGCGAGAAAGCTCTTGGTATGCTTGAGGAAATCCATAGAAATGGCCTTACCCCATCTCCNGTATCCTATTCCCAAGCCATGTTGGCGTATCGGAGAATGGAAGATGGCAATGGAGCTCTAAATTTCTTTGTTGAATTTAGAGAAAAGTATCGNGCGGGTGAAATAGGAAAAGATGACGATGGAGAGGATTGGGAGAAAGAATGCAGAAGTCTTGAGAGGTTTACAATCCGTGTTTGCTATCAGATAATGCGCCGTTGGCTTGTCAGTTCTGAGAACTTGAGCAGCAATGTGTTGAGATTTCTTGTTAGTATGGATAATGCTGGGATTTCACTGTCGCGGGCCGATCTCGAGCGACTTGTGTGGGCTTGTACTCNCGAAGATCACTACCGTGTCGTGAAAGAGCTCTACCTCCGGATAAGAGAAAGGTATGATAAGATCAGCTTGTCTGTCTGCAACCATGTAATCTGGTTGATGGGGAAAGCCAAGAAGTGGTGGGCAGCTTTGGAGATATATGAAGATTTACTGGAAAAGGGGCCAAAGCCAAATAACTTGTCATATGAATTGGTAATGTCTCACTTCAGATTTCTTCTTAGTGCAGCCAAGAAAAAGGGTATATGGAAATGGGGTGTCAGATTGTTAAACAAGATGGAAGAGAAAGGCCTAAAACCTGGAAGTAATGAATGGAATGCAGTTCTTGTGGCCTGTTCTAAGGCATCGGAAACCACAGCAGCCGTGCAAATATTTAGGAGAATGGTGGAAAATGGNGAAAAGCCTACCATAATTTCATATGGGGCTTTATTGAGTGCTCTTGAAAAGGGAAAACTCTACGATGAAGCCTTCCGTGTGTGGAACCATATGCTCAAGGTTGGGGTTGAACCAAATGCATACACCTACACAATTATGGCTTCAATTTATACTGCACAAGGAAACTTCAGTAGAGTCGATGCCATCATTCGGGAGATGGTAACCATAGGAGTNGAGGTAACGGTAGTGACATACAACGCAATAATTAGTGGTTCTGCAAGGAATGGTTTTAGCAGTGCAGCATATGAATGGTTTCACAGGATGAAAGTTCAGAACATCTCTCCCAATGAAACAACTTATGAAATGCTGATTGAGGCCCTTGCAAATGATGGAAAGCCAAGGTTGGCATATGAGTTGTATCTGAGAGCTCAGAATGAAGGCCTTTTCCTCTCTTCAAAAGCTTATGATGCAATTCTGCAATCGTCTCTTGCTTATGGCGCCACCATCGATGTTGGCNGTTTAGGACCTCGTCCTGAAGATAAAATGAAGAAAGTGCAAATTGGAAAAAAACATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00769	53326	55698	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000769s00037465.1	PF13041.1	PPR_2	262	294	1.50E-07
Glyur000769s00037465.1	PF01535.15	PPR	303	331	0.16
Glyur000769s00037465.1	PF13041.1	PPR_2	335	376	4.30E-09
Glyur000769s00037465.1	PF01535.15	PPR	501	529	0.61
Glyur000769s00037465.1	PF01535.15	PPR	579	606	0.017
Glyur000769s00037465.1	PF13041.1	PPR_2	609	653	1.50E-11
Glyur000769s00037465.1	PF13041.1	PPR_2	681	727	1.80E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.142
SRR1783600	control	2.229
SRR1783602	moderate drought stress	2.571
SRR1811619	moderate drought stress	2.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.911
DRR006520	Root Summer glycyrrhizin high producing strain	3.924
DRR006521	Root Winter glycyrrhizin high producing strain	3.266
DRR006522	Root Winter glycyrrhizin high producing strain	3.234
DRR006523	Root Summer glycyrrhizin low producing strain	3.098
DRR006524	Root Summer glycyrrhizin low producing strain	3.224
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.900
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.104

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	5.454
SRR2868004	Drought Stress (root)	6.195
SRR2967015	Control (root)	5.600

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.324
SRR9715740	Leaf	13.414
SRR9715741	Leaf	11.160
SRR9715739	Root	0.680
SRR9715742	Root	4.008
SRR9715743	Root	3.891

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.532
SRR8749028	MeJA induced 9h	9.978
SRR8749029	MeJA induced 9h	6.731
SRR8749030	Uninduced	2.689
SRR8749031	Uninduced	2.225
SRR8749032	Uninduced	2.841

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.821
SRR8400027	Control - Root	5.810