Gene detail information of Glyur000768s00019898 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G04900.1 | 4.00E-131 | NYC1-like |
| NR | KEH19223.1 | 0 | chlorophyll(ide) B reductase, putative [Medicago truncatula] |
| COG | NP_662034.1 | 3.00E-41 | short chain dehydrogenase/reductase oxidoreductase [Chlorobium tepidum TLS] |
| Swissprot | tr|Q8LEU3|NOL_ARATH | 1.00E-165 | Chlorophyll(ide) b reductase NOL, chloroplastic (Precursor) |
| trEMBL | tr|A0A072TQT8|A0A072TQT8_MEDTR | 0 | Chlorophyll(Ide) B reductase, putative {ECO:0000313|EMBL:KEH19223.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00768 | 97054 | 104245 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K13606 | NOL, NYC1 | EC:1.1.1.294 | Porphyrin and chlorophyll metabolism | map00860 |
| Porphyrin and chlorophyll metabolism | map00860 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000768s00019898.1 | PF00106.20 | adh_short | 87 | 255 | 3.50E-23 |
| Glyur000768s00019898.2 | PF00106.20 | adh_short | 88 | 232 | 1.40E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.245 |
| SRR1783600 | control | 16.684 |
| SRR1783602 | moderate drought stress | 24.206 |
| SRR1811619 | moderate drought stress | 23.693 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.016 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.825 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.630 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.836 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.683 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.912 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.355 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.451 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.430 |
| SRR2868004 | Drought Stress (root) | 9.286 |
| SRR2967015 | Control (root) | 11.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.112 |
| SRR9715740 | Leaf | 15.440 |
| SRR9715741 | Leaf | 13.453 |
| SRR9715739 | Root | 2.726 |
| SRR9715742 | Root | 4.098 |
| SRR9715743 | Root | 3.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.770 |
| SRR8749028 | MeJA induced 9h | 7.508 |
| SRR8749029 | MeJA induced 9h | 6.615 |
| SRR8749030 | Uninduced | 15.486 |
| SRR8749031 | Uninduced | 7.399 |
| SRR8749032 | Uninduced | 9.980 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.985 |
| SRR8400027 | Control - Root | 15.311 |