Gene detail

Gene detail information of Glyur000768s00019893

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G57330.1	0	autoinhibited Ca2+-ATPase 11
NR	KEH19263.1	0	calcium-transporting ATPase [Medicago truncatula]
COG	YP_004971639.1	3.00E-137	plasma-membrane calcium-translocating P-type ATPase [Desulfosporosinus orientis DSM 765]
Swissprot	tr\|Q9M2L4\|ACA11_ARATH	0	Putative calcium-transporting ATPase 11, plasma membrane-type
trEMBL	tr\|A0A072TQY5\|A0A072TQY5_MEDTR	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000768s00019893.1
ATGGAGAGATTGCTGGAGGATTTCAGTTTAGAGGCGAAGAATCCGTCTGTAGAGGCGATGAATCGTTGGAGATCGGCCGTCTCGGTGGTGAAGAATCCCCGGAGAAGGTTCCGCATGGTCTCGGATCTCCCAAATCGTGCCCAAGCGATACAAATCAAGGAAAACATTCAGGAAAACATTCGGATTTCACAATATGTTCGAAAATCAGCTTTGCAGTTTGTTGATGCTGGTTCTGGTAAACTTGAAGTTGAACACGAGAATCTCGCTACATCTGATCTTCAAGCTGGTTTTGGCATTGATCCAGATTCGATATCATCCCTTGTTCATAACTATGATAACAATGGGTTGAAACGAATTGATGGAGTTGAAGGGGTTGCAAGGAAACTCCATGTTTCAATGGTAGATGGTATTAGTGAAGACAGTGTGAATACCCGGCAACAATTTTATGGGTTTAACCGCTATGCAGAAAAGCATTCTAAAACCTTTCTTACATTTGTGTGGGAATCACTACAGGACTCAACACTTGTTATTCTCATGGTTTGTTCCTTAGTATTAATAGGTTTAAGAGTTGTCACTGAAGGGTGGCCAGTGAGTGTGTATGATGAGATGGGAATTATACTTGGTGTACTCTTGGTAGTCATCTTTACAGCTNTCAATGACTACCAGCAATCATTGAAGTTCAGGGAATGGGACAAAGAGAACAAAAACATTTCTGTTCAGGTCACCAGGGATGGGAAAAGACAGAAGATATCAATTTACAACCTGGTAGTAGGAGACATTGTTCATTTGTCAATTGGAGATCAAATTCCTGCTGATGGGATTTACATATCAGGATATGGTTTACACATCGACGAATCAAGTTTAACAGGTCAGATTGAAACTGTTAATGTAAGTGAAGAAAAACCTTTTCTTCTTTCAGGAACCAAAGTGAAAGATGGGTCAGGGAAGATGCTAGTGACAACTGTTGGTGTGAGGACTGAATGGGGAAAGTTAATGGAAGTTTTGAATGAGGGAGGAGAGGAGGAGACCCCATTGCAGGTGAAATTGAATGGAGTTTCTACAGTCATTGGTAAGATTGGCTTGAGTTTTGCTCTTTTGACATTTGCGGTGTTAATGATACGGTTTCTGGTGGAAAATGCACTTCGTGGTGAGTTTACTAATTGGTCCTCCAAAGATGCAATGAAGCTGCTAAACTACTTTACTATAGTTGTGACCATGATAGTCATTGCTGTTCCTGAAGGCTTACCATTGGCTGTGACACTCAACCTTGCTTTTGCAACAAAAAAATTAATGAGTGATGGGGTACTAATGAGGCATCTTTCAGCATGTGAGGCAATGGGTTCAGCCAGTTATATTTGCTTAGATAAGACAGGGACGTTGACCACTAACCACATGGTGGTTGATAAAATATGGATATCTGGAGAAGTTGTGGAGATGAAAGGTAATGAGAGTGGAGACAAACTGAAAAGAAAGATACCTGTAGAAGTTCTAAACATACTTTTGCAGGGTTTATTTCAAAATAATGCTTCTGAAATTGTTACGGATAAACATGGAAAGGACACAATATTGGGAACGCCAACGGATTCAGCATTATTGGAACTTGGCTTTTCTTTGGGGGGCAATTTTGATGTCCAATCCAGATCGTATAAGAAACTTAAGGTTGAACCTTTCAATCCTGTCCAGAAGAAGATGACTGTCCTTGTTAGTCTTCCTGATGGAGGAGTAAGAGCTTTCTGCAAAGGTGCTTCTGAAATAATATTAAAAATGTGCGACAAAATNATTGATTGCAATGGAATACCTGTTGATTTCCTTGACGAACACGCAAATAATGTCTATCATGTTATAAATGCTTTTGCCTCTGAAACTTTGAGAACTCTTTGTTTGGCTGTCAAAGATATAAATGTAATCCCTACTGAAGCTAACATCCCTGATAATGGCTATACACTGATAGCCATTGTTGGAATCAATGATCCTGTACNCCCTGGGGTCAAAGATGTTGTTCAAACTTGTTTAGCAGCTGGAGTGACCGTTGCTATGGTCACTGGTGATGATATAAACATAGCTAGGAGTATTGCTACAGAATGTGGTATACACACTGATGGTGGTGTAGCCATAGAAGGACCACAATTTCGCAACTTGTCTACAAGACAAATGAAGGTTATCATGCCAAGAATTCAGGTGATGGCACGATTTCTACCGCTTGACAAACACTCCTTTGTAGCTAATTTGAAGAATATGTTTGGTGAGATTGTTGCTGTTACTGGTGATGGAACCANTGATGCTCCTGCACTGCATGAGGCAGACATTGGAATTGCCATGGGATTAGCAGGAACCGAGGTTGCCAAAGAAAATGCTGATATCATTATAATGGATGACAATATCACAACTATTGCCAATATTATCAAATGGGGTCGTGCAGTATACATAAACATTCAAAAATTAGTGCAGTTTCAGTTAACAGTCATCTTTGTTGCTCTGGTGGTCAACCTTGTTTCTGCATCGGCTGCAGGACATGTCCCCCTAACAGCTGTGCAGTTGCTTTGGGTCAACTTGATTATGNACATTCTCTGTGCTTTAGCCCTGGTCACTGAGCCACCTAATGATATGCTTATGAAAAGGCCTCCNGTTGGAAGACGAGCGACGTTTATCACCAAAGCCATGTGGAGGAATATCTTTGGCCAAAGCATATATCAAGTAATTGTCCTTACTGTTCTTAATTTTGAAGGGAAGGATATACTGAGTATAAGTGGTTCAGATGCAGATGATGTGCTCAGAACTTTGATATTCAGCTCCTTTATATTTTTTCAGGTGTTCAATGAGATAAACTGCCGAGAGATAGAAAAGATAAACATTTTCANAGGCATTTTTGACAGCTGGACATTTTTGGTGATAATTTTCTCAACGGTGGCAATTCAGGTAATCATAGTGCAGTTCCTCGGAACATTTGCCTGCACAGTGCCTCTGAACATGGAGCTATGGTTACTTAGTGTTTTAATTGGTGCCACTAGCATGCTTATAGCTTCTCTTCTGAAGTGCATCCCAGTGGAAAGAGATACAAGTATAAACCATGATGGTTATGACTATGAGGCACTGCCTACGCATCCTTAGCTTGCACAAAATTCAGGAAGAATATGCTTTTCCTTCCCTTTACTCTTCTTTGTGAATCCATGNATGTATGTATAATCTTTGGCCCCTTGAAAATTGAATTTTCTTTTCGAGGAACAGTCAACAGTGACATCATTATCACGAGTTCACGACCTTACCCTTACCTGCGTCAT

Protein Sequence

>Glyur000768s00019893.1
MERLLEDFSLEAKNPSVEAMNRWRSAVSVVKNPRRRFRMVSDLPNRAQAIQIKENIQENIRISQYVRKSALQFVDAGSGKLEVEHENLATSDLQAGFGIDPDSISSLVHNYDNNGLKRIDGVEGVARKLHVSMVDGISEDSVNTRQQFYGFNRYAEKHSKTFLTFVWESLQDSTLVILMVCSLVLIGLRVVTEGWPVSVYDEMGIILGVLLVVIFTAXNDYQQSLKFREWDKENKNISVQVTRDGKRQKISIYNLVVGDIVHLSIGDQIPADGIYISGYGLHIDESSLTGQIETVNVSEEKPFLLSGTKVKDGSGKMLVTTVGVRTEWGKLMEVLNEGGEEETPLQVKLNGVSTVIGKIGLSFALLTFAVLMIRFLVENALRGEFTNWSSKDAMKLLNYFTIVVTMIVIAVPEGLPLAVTLNLAFATKKLMSDGVLMRHLSACEAMGSASYICLDKTGTLTTNHMVVDKIWISGEVVEMKGNESGDKLKRKIPVEVLNILLQGLFQNNASEIVTDKHGKDTILGTPTDSALLELGFSLGGNFDVQSRSYKKLKVEPFNPVQKKMTVLVSLPDGGVRAFCKGASEIILKMCDKXIDCNGIPVDFLDEHANNVYHVINAFASETLRTLCLAVKDINVIPTEANIPDNGYTLIAIVGINDPVXPGVKDVVQTCLAAGVTVAMVTGDDINIARSIATECGIHTDGGVAIEGPQFRNLSTRQMKVIMPRIQVMARFLPLDKHSFVANLKNMFGEIVAVTGDGTXDAPALHEADIGIAMGLAGTEVAKENADIIIMDDNITTIANIIKWGRAVYINIQKLVQFQLTVIFVALVVNLVSASAAGHVPLTAVQLLWVNLIMXILCALALVTEPPNDMLMKRPPVGRRATFITKAMWRNIFGQSIYQVIVLTVLNFEGKDILSISGSDADDVLRTLIFSSFIFFQVFNEINCREIEKINIFXGIFDSWTFLVIIFSTVAIQVIIVQFLGTFACTVPLNMELWLLSVLIGATSMLIASLLKCIPVERDTSINHDGYDYEALPTHP

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00768	62555	68803	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0070588 calcium ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0005388 calcium-transporting ATPase activity

GO:0005516 calmodulin binding

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000768s00019893.1	PF12515.3	CaATP_NAI	4	48	8.10E-16
Glyur000768s00019893.1	PF00690.21	Cation_ATPase_N	121	184	5.00E-12
Glyur000768s00019893.1	PF00122.15	E1-E2_ATPase	205	445	2.80E-59
Glyur000768s00019893.1	PF00702.21	Hydrolase	452	768	3.10E-18
Glyur000768s00019893.1	PF00689.16	Cation_ATPase_C	839	1012	2.10E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.568
SRR1783600	control	10.541
SRR1783602	moderate drought stress	12.378
SRR1811619	moderate drought stress	12.321

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.165
DRR006520	Root Summer glycyrrhizin high producing strain	5.207
DRR006521	Root Winter glycyrrhizin high producing strain	5.925
DRR006522	Root Winter glycyrrhizin high producing strain	5.749
DRR006523	Root Summer glycyrrhizin low producing strain	3.815
DRR006524	Root Summer glycyrrhizin low producing strain	3.860
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.099
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.159

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.858
SRR2868004	Drought Stress (root)	7.506
SRR2967015	Control (root)	7.657

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.923
SRR9715740	Leaf	6.163
SRR9715741	Leaf	7.308
SRR9715739	Root	1.055
SRR9715742	Root	7.216
SRR9715743	Root	6.356

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.514
SRR8749028	MeJA induced 9h	2.237
SRR8749029	MeJA induced 9h	0.760
SRR8749030	Uninduced	1.004
SRR8749031	Uninduced	0.284
SRR8749032	Uninduced	0.313

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.432
SRR8400027	Control - Root	10.595