Gene detail information of Glyur000768s00019888 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28010.1 | 5.00E-24 | Polyketide cyclase/dehydrase and lipid transport superfamily protein |
| NR | KHN05143.1 | 1.59E-82 | MLP-like protein 43 [Glycine soja] |
| Swissprot | tr|P85524|KIRO_ACTDE | 1.00E-21 | Kirola {ECO:0000303|PubMed:21309790} |
| trEMBL | tr|K7K8V1|K7K8V1_SOYBN | 6.00E-83 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G25950.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00768 | 34528 | 35788 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000768s00019888.1 | PF00407.14 | Bet_v_1 | 3 | 153 | 2.80E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 102.303 |
| SRR1783600 | control | 110.963 |
| SRR1783602 | moderate drought stress | 278.650 |
| SRR1811619 | moderate drought stress | 297.685 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1002.267 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1075.179 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 40.129 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 38.352 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 185.556 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 210.069 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.511 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.307 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 940.021 |
| SRR2868004 | Drought Stress (root) | 1331.379 |
| SRR2967015 | Control (root) | 1453.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 66.300 |
| SRR9715742 | Root | 57.862 |
| SRR9715743 | Root | 62.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.705 |
| SRR8749028 | MeJA induced 9h | 27.501 |
| SRR8749029 | MeJA induced 9h | 12.564 |
| SRR8749030 | Uninduced | 2.838 |
| SRR8749031 | Uninduced | 3.377 |
| SRR8749032 | Uninduced | 2.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 183.464 |
| SRR8400027 | Control - Root | 149.687 |