Gene detail

Gene detail information of Glyur000767s00028537

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22910.1	0	ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
NR	XP_003554951.1	0	PREDICTED: putative calcium-transporting ATPase 13, plasma membrane-type-like [Glycine max]
COG	YP_004971639.1	7.00E-158	plasma-membrane calcium-translocating P-type ATPase [Desulfosporosinus orientis DSM 765]
Swissprot	tr\|Q9LIK7\|ACA13_ARATH	0	Putative calcium-transporting ATPase 13, plasma membrane-type
trEMBL	tr\|I1N6I6\|I1N6I6_SOYBN	0	Calcium-transporting ATPase {ECO:0000256\|RuleBase:RU361146}

Sequence

Transcript Sequence

>Glyur000767s00028537.1
ATGTCAATTACCATGCTCACAACAATCTTGAAGCGCATTGAGACACTTCTCAATGCACCAAACACCATTACTGAACCCAACAAAAAGAGATGGCACACTGCATTCATGACCATCTATTGTTCTCGAGCTCTCATGTCACACTTCACCACTCCGCTCAACAAAACCAAAGAAAAATTCAAAATCTCACCTTTACCATCATTCACCGTGGTTGATTTGAATCCACCCAACTCCTTCACAATTGACCAAGCAACTCTCACAGAGATTGTGAAAGAGAAAAGCATTGACATTCTTCAGAAACATGGTGGGGTTGATGGGGTTGCTTCATCCCTTGACACCAACGTTGAGTTTGGCATAAAGGGNAGTGATGACCATGAAAGCATTGCACTTAGGAAACAAGTGTTTGGTTCCAACACTTACAAAAAACCACCTTCCAAAGGTTTCTTCCATTTCGTCATTGAATCCTTCAAGGATGTAACCATTCTCATCCTCTTGGCTTGTGCTGCTCTTTCCCTTGGTTTTGGAATCAAGGAGCATGGACTCAAAGAAGGTTGGTATGATGGTGGTAGCATCTTTGTTGCTGTCTTCATTGTAATCTCCATGTCTTCAATAAGCAACTTCAGNCAGAACAAACAATTTGAGAAACTCTCTCAAGTAAGCAATGATATCCCAATTGATGTTGTTAGAAGTGGGAAACGCCAAAAAGTCTCAATCTTTGAGGTTGTTGTTGGNGATGTTGTTTGTTTGAAGATTGGTGACATGGTACCAGCTGATGGNTTATTCATAGATGGACACTCATTGAGTGTTGATGAATCAAGCATGACAGGGGAGAGTGATCATGTTGAGGTCAGCAGAAGATGCCAAAACCCTTTTTTGTTTTCTGGGACAAAGGTGGCTGATGGGTATGCTAAGATGCTTGTTACCTCAGTTGGCATGAACACAACATGGGGACATATGATGAGCTCCATAAGCCGCGACATCGATGAGGAGACACCTTTGCAATCAAGGCTTAACAAGCTCACATCATCAATTGGGAAGGTTGGTTTGGCTGTGGCATTTTTGGTTCTTGTTGTGTTGCTTGTTCGTTACTTCACAGGGAACACAGAGGATGAGAATGGGGCTAGGGAGTTTTTTGGTAGTGGGAGTAACAAGACTAGTTTTGATGATGTGATGAATGCTGTTGTTGGGATTGTTGCTGATGCTGTTACCATTGTTGTGGTTGCAATCCCTGAGGGTCTTCCATTGGCTGTGACACTCACCCTTGCTTATTCCATGAAGAAAATGATGGCTGATCAAGCAATGGTTAGAAAACTCTCTGCATGTGAGACAATGGGGTCTGCCACTACTATTTGCACTGATAAAACAGGCACACTCACTTTGAACCAGATGAAGGTGACCAAGTTTTGGCTTGGACTAGAGCCTGTGGTAGAAAGTGCATACTCAAAAGTTGCTCCATTTGTTCTCCAATTGATCAAAGAAGGAGTGGCTCTTAACACAACTGGTGGGGTGCACAACAACAACAACAACAACAACAACAATTCTTCTGAAGAATCAGGTAATTCTGAATTTGAGTTTTCAGGTAGTCCAACAGAAAAGGTAATCTTATCTTGGGCTGTATTGGAATTGAACATGGACATGGAGCACTTGACAAAGAGCTGTTCCATCCTTCACGTTGAGACCTTCAACTCAAAGAAGAAAAGAAGTGGTGTTTTGTTGAGAAGGAATGCAGACAACACAGTCAATGCACATTGGAAAGGAGCAGCTGAGATGGTACTGAGGATGTGTTCAAGATACTATGATGCATCTGGCATTGTGAAAGATCTTGACAAGGATAACATGTTGGAATTCGAACGCATTATTCAAGGTATGGCGGCTAGTAGTCTTCGTTGTATCGCTTTGGCACATGCAGAAGTGGCAGAAGCAGAAGAGAAGCTTGGAGATGATGAAGATGAAGGAGGCAACAAAAATGTGGTGATCAAAGACAATGGTTTAACACTGTTAGGACTTGTTGGTATCAAGGATCCATGTCGTCCCGGGGTGAAGACAGCTGTGGAAGCTTGCCAAAGCGCCGGGGTGAATGTCAAAATGATCACAGGTGACAATGTTTTCACTGCAAAGGCTATAGCCACTGAATGCGGCATACTCCAGCCTAATCAGGACACGGTCGGAGCAGTGGTTGAAGGAGAGGAGTTTCGGAACTACACACATGAAGAGAGGTTGGAGAAAGTGGACAAGATCTGTGTGATGGCAAGGTCCTCTCCTTTTGACAAACTCCTAATGGTTCAGTGCCTAAAACAGAAAGGCCATGTAGTTGCTGTCACTGGGGATGGCACAAATGATGCACCAGCACTCAAGGAAGCAGATATTGGACTTTCCATGGGAATTCAAGGCACTGAAGTNGCCAAAGAGAGCTCAGATATTGTCATATTGGACGACAACTTCGCGTCCGTGGTCACGGTCTTAAGGTGGGGGAGATGTGTTTACAACAACATCCAGAAATTCATTCAGTTCCAATTAACAGTCAATGTTGCTGCACTAGCAATCAACTTTGTGGCTGCAGTTTCAGCAGGGGAAGTTCCACTTACAGCAGTGCAATTATTATGGGTGAACTTGATCATGGACACATTAGGTGCTTTGGCTCTTGCCACAGAGAAGCCTACAATGGAGCTGATGGATAAGCCACCAGTTGGTAGAACAAAACCTCTCATCACCAACATCATGTGGAGGAATCTATTGGCACAAGCTTTGTACCAGATAGCAGTTTTGCTTACCCTTCAATTCAAAGGTGAGTCTATCTTTGGGGTGACATCAAAGGTGAATGACACATTGATATTCAATACATTTGTTCTATGTCAAGTGTTCAATGAGTTCAATGCAAGGAAGATGGAGAAGAGGAATGTTTTCAAAGGCATACATCGGAGCAAGTTGTTTTTGGGAATTGTTGGGGTAACAATAGTACTTCAAGTGGTGATGGTTGAGTTTCTCAAGAAGTTTGCTGATACTGAGAGGTTGAATTGGGGGCAGTGGGGTATTTGTATTGGTCTTGCTGCAGTTTCTTGGCCAATTGGTTGGGTTGTGAAGTTGATACCTGTCCCAGATAAACCATTCCTTAGTTTTTTGAGTAAGATGAAGAGGTAG

Protein Sequence

>Glyur000767s00028537.1
MSITMLTTILKRIETLLNAPNTITEPNKKRWHTAFMTIYCSRALMSHFTTPLNKTKEKFKISPLPSFTVVDLNPPNSFTIDQATLTEIVKEKSIDILQKHGGVDGVASSLDTNVEFGIKGSDDHESIALRKQVFGSNTYKKPPSKGFFHFVIESFKDVTILILLACAALSLGFGIKEHGLKEGWYDGGSIFVAVFIVISMSSISNFXQNKQFEKLSQVSNDIPIDVVRSGKRQKVSIFEVVVGDVVCLKIGDMVPADGLFIDGHSLSVDESSMTGESDHVEVSRRCQNPFLFSGTKVADGYAKMLVTSVGMNTTWGHMMSSISRDIDEETPLQSRLNKLTSSIGKVGLAVAFLVLVVLLVRYFTGNTEDENGAREFFGSGSNKTSFDDVMNAVVGIVADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATTICTDKTGTLTLNQMKVTKFWLGLEPVVESAYSKVAPFVLQLIKEGVALNTTGGVHNNNNNNNNNSSEESGNSEFEFSGSPTEKVILSWAVLELNMDMEHLTKSCSILHVETFNSKKKRSGVLLRRNADNTVNAHWKGAAEMVLRMCSRYYDASGIVKDLDKDNMLEFERIIQGMAASSLRCIALAHAEVAEAEEKLGDDEDEGGNKNVVIKDNGLTLLGLVGIKDPCRPGVKTAVEACQSAGVNVKMITGDNVFTAKAIATECGILQPNQDTVGAVVEGEEFRNYTHEERLEKVDKICVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASVVTVLRWGRCVYNNIQKFIQFQLTVNVAALAINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTMELMDKPPVGRTKPLITNIMWRNLLAQALYQIAVLLTLQFKGESIFGVTSKVNDTLIFNTFVLCQVFNEFNARKMEKRNVFKGIHRSKLFLGIVGVTIVLQVVMVEFLKKFADTERLNWGQWGICIGLAAVSWPIGWVVKLIPVPDKPFLSFLSKMKR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00767	114625	117759	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0070588 calcium ion transmembrane transport

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function

GO:0000166 nucleotide binding

GO:0005388 calcium-transporting ATPase activity

GO:0005524 ATP binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000767s00028537.1	PF00690.21	Cation_ATPase_N	100	170	5.40E-11
Glyur000767s00028537.1	PF00122.15	E1-E2_ATPase	189	442	3.10E-64
Glyur000767s00028537.1	PF13246.1	Hydrolase_like2	511	597	1.20E-09
Glyur000767s00028537.1	PF00702.21	Hydrolase	642	787	6.70E-23
Glyur000767s00028537.1	PF00689.16	Cation_ATPase_C	858	1028	1.30E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.496
SRR1783600	control	0.510
SRR1783602	moderate drought stress	0.121
SRR1811619	moderate drought stress	0.127

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.004
DRR006520	Root Summer glycyrrhizin high producing strain	0.912
DRR006521	Root Winter glycyrrhizin high producing strain	0.071
DRR006522	Root Winter glycyrrhizin high producing strain	0.069
DRR006523	Root Summer glycyrrhizin low producing strain	2.976
DRR006524	Root Summer glycyrrhizin low producing strain	3.303
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.572
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.630
SRR2868004	Drought Stress (root)	1.397
SRR2967015	Control (root)	0.711

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.333
SRR9715740	Leaf	1.183
SRR9715741	Leaf	1.263
SRR9715739	Root	0.550
SRR9715742	Root	7.192
SRR9715743	Root	5.963

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.563
SRR8749028	MeJA induced 9h	2.731
SRR8749029	MeJA induced 9h	1.056
SRR8749030	Uninduced	0.200
SRR8749031	Uninduced	0.224
SRR8749032	Uninduced	0.154

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.485
SRR8400027	Control - Root	0.570