Gene detail

Gene detail information of Glyur000767s00028533

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G14470.1	9.00E-70	NB-ARC domain-containing disease resistance protein
NR	KEH25217.1	0	NBS-LRR disease resistance protein [Medicago truncatula]
COG	YP_001208947.1	2.00E-07	leucine rich repeat domain-containing protein [Dichelobacter nodosus VCS1703A]
Swissprot	tr\|Q7XA40\|RGA3_SOLBU	8.00E-118	Putative disease resistance protein RGA3
trEMBL	tr\|A0A072U6A3\|A0A072U6A3_MEDTR	0	NBS-LRR disease resistance protein {ECO:0000313\|EMBL:KEH25217.1}

Sequence

Transcript Sequence

>Glyur000767s00028533.1
ATGGATAACACTGGCCCTGGCCTGATTCCTTTCTCTGTAGTTGAAAGCATCATGAATAAACTTACCTCACCACACTTCCGTGAATTGGGACCGATTAAAGGTGTCAATGATGAATTGGACAGAATTAAGGGTGGAATTGAATCCATCAAAGCAGTGCTGCCTGATGCCGAGTTCACACAATTTCTAGAGACAGAGACAGGTGATGTACGACTCCGGATAACAAGGCCCAAAGAATTCTGGATAAAAATGCTGAAAGATGTACTTGTTGCTGCTGATGACCTCTTCGATGAAGTTGCCACTGAAAATTTGCTGAGACTCAAACGCGATGGTGGGACTGNGAGGAAGGTACGTAGTTTCTTCTTCTCTTCCACAAATGCAATTTCTTATCGTAAACGAATTGCTCGTGAAATAAAGAGGATAGCAAAGAAGGTTAATGATATAGTGGAACGTATGTCTCGTTTGAAAATGAGTCAGTTTAATTTAAAATATGAGGGTGAGTGGCAGGCAACAATTTCTTCTTTCGAAAAATCAGATCTGATTGGCAGAGAAGCCGAGAAAATGGAGCTTGTAAGACTGTTGACGCAACCGCATGGAAACGAAAATATTTCCTTGATTGCTATTGTTGGTGCCGGTGGCATAGGCAAAACAGCGGTTGCTAAAATGGTATATGCTCATGAGGNNATCAAAGANTCCTTTGNAAAGCGAATGTGGGTGAATGCTTATGGTGATGTGAGAGCTAGTGTGAAGAAAATTATAGATCAATTGTTAACTAGTGACGAAAGAAATGATNAAGAATCATTAGATTTAGAAGTCTTGCTAAATAAGCTTGATGATATTTTAAATGGTAAAAAGTATTTGTTAGTGTTAGATGGTATCTGCATCGAGTGGCATGAAACATGGACTCAACTGAAAAATCATTTGATGTGTGGGGCTCAAGGTAGTAAGATTTTAGTGACCACGCGTAGCACAGTTGTCACCGAAGTAATGAAAGTCAACATTTTGTTTCATTTGAAAAGCATGAGTGACGAAGATTCTTGGAGTTTGTTGAAAGAATTGGTGTCACACTATGCTCGCGGTCTAATGAACCGTATGCTAGAACAAGAACCAGTTGGTAAAAAAATAGCAATGAAGTATGGTGGATTTCCATTGGCAGTTAAAATAGTGGCACGCACATTATATCTTAATTTTATAGACGAAGAAAGTGAATGCATTAATGTTTTAGAAAAAGATTTTTGGGAACTGGGTCGTAGCGATGTGTTATTGACTGCTCTTAAGTTGACTTTCCGAGACTTGTTGCCCCGATTGAAACAATGTTTTGCTTATTGCTCTGTGTATCCTAAGGGTTGGGAAATTGGAAAGAATGAGTTGGTTCAATCATGGATGGCACAGGGTTACCTGGAATGTAACGATGATGAACAGAAAATGGAAGATGTGGGCAATGAATTTGTTGAAACTCTATTAAACTATTCCTTTTTTAGAGATGCGAAAATGGATGAATCTGGTAGTTTAGTTAGTTTCAAAATGCATGGTTTGATTCATGATCTTGCATTGGTGGTAGCCGGCAATGATTACTGTCACTTGAATAGTGAGAGAAAAGTCAATACACCAGCCATGCACATGTGCTTCACATCTGAATCTGACACCATTGATTTGTTGGGTTCATTAGATGCGAGTACTAGTAGACTGCGAACCTCAATTTTTCTGCCGCGGGCAGATGATCGGGAGTTTGCTCAGATGACAAGAGAGTTGTCTGTTATTTTAAGATTCAAACGCTTGCGCATNTTGAATCTGTCTCATTCTTCTTTAAAGAAGTTGCCAGATTTAATTGGCAGATTGAAGCATTTGAGATATCTTGACTTATCTTGGTGCGTAAAACTAGCAAGTCTTCCCAAATCGATAGGCAANCTCGTTAACTTACAGACATTGAAGTTTACTGGTTGTGAGACACTTGAATTTTCCACAGAAGTTGTCACAAAGTTGATCAATTTGAGGCACCTTGAGATTCATCGTTGTAAGGCCTTTGAGGACATGAATCACATGATGCCGGCTGGACTGGGGAAACTATCGTCATTGCAATCCTTATCAAGGTTTCACGTGGTGGCTGCTGATCATCATCAGAAGAAGAAAGCTGGCAAACTGAATGAGTTGCAGAACCTGAACAACCTAAGGGGCAATTTAGAGATTAGCGGTCTTGACCAGGTAAGAGACGTGATGCGGGAATCGCAGGATGTAAATCTGAAAGNCAAGAANCTCCTTGTNTCCTTGGATTTAGANTGGGGGAATCANGACGAANCAGGGGACAGCTTACAACTATTAGAAAATCTTCGCCCCCATGAATGCCTAAAAGGATTGTACGTGCGGTGGTATCCAGGTGAGAGGTTTTCTGATTGGCTTTCTTCCATCGACCATCTTTCTCACATCTACCTCTTCGGNTTTCATAACTGCANGNNTCTCCCACCATTAGAGNATCTCCCACACCTCANGTCTCTTGAGATAGGTTCTATGAAACGATTGGAGGTCATAAGTTTTGAAGCGTCGTCTCTAGGGAATCCAGCAAAGTTCTTCCCATCTTTGGAGAGACTCCAGATTAGCGGTTGTCAGAACCTCGAGGGATGGCGGCTACCAGGTGATAGTGATTTTTGTCGACGGTTGATGATAATATATCGTCAAGTGGCTCATCGTCTCTCTCAATTAATAATCAACAGGTGCCCAGTGTTGGTCTATCTTCCTAGGTTTCCAAATGTTGAGGAATTGCAATTGCAATTATTTCCGTATATGTTGTACCCATTGGCAGAAACACTGGAGCCATCAGTAACACTGCCGGAGGAGGACGTCGCTCCTCTTTCAAAGCTCAGGTCGCTGAAGATAGAAGGCAAACTTAGGGGCATCGGATATTTGCCATCTGGGTGGAAAGAAAATCTTACTTCTCTCGAGTATCTTGAAATTGGGGACGTTGAGAACTTAGACAGATGGTTTGAGAAGGAGGACAGCTTCCCTTCTCTGCGGGAAATCGTGATATATGATTGTGATTCGCAAGCTTTGCCGGATAAGATGTGTGACTTGCAATCACTTGAGCATATCAAGATACTGGGATGCCATAAATTGGCGTCGCTGCCGGATAGAATGACTAACCTTACCAATTTAAAGACACTGGAAATCTCGGATTGTCCACTCCTAGTTGAAAGGTGCCAGAGGGAAACAGGAGCAGATTGGCCCANGATTTCTAAGATCCAGNGCAGAATATTGAAGCTAAATGAGAGGCGCTAA

Protein Sequence

>Glyur000767s00028533.1
MDNTGPGLIPFSVVESIMNKLTSPHFRELGPIKGVNDELDRIKGGIESIKAVLPDAEFTQFLETETGDVRLRITRPKEFWIKMLKDVLVAADDLFDEVATENLLRLKRDGGTXRKVRSFFFSSTNAISYRKRIAREIKRIAKKVNDIVERMSRLKMSQFNLKYEGEWQATISSFEKSDLIGREAEKMELVRLLTQPHGNENISLIAIVGAGGIGKTAVAKMVYAHEXIKXSFXKRMWVNAYGDVRASVKKIIDQLLTSDERNDXESLDLEVLLNKLDDILNGKKYLLVLDGICIEWHETWTQLKNHLMCGAQGSKILVTTRSTVVTEVMKVNILFHLKSMSDEDSWSLLKELVSHYARGLMNRMLEQEPVGKKIAMKYGGFPLAVKIVARTLYLNFIDEESECINVLEKDFWELGRSDVLLTALKLTFRDLLPRLKQCFAYCSVYPKGWEIGKNELVQSWMAQGYLECNDDEQKMEDVGNEFVETLLNYSFFRDAKMDESGSLVSFKMHGLIHDLALVVAGNDYCHLNSERKVNTPAMHMCFTSESDTIDLLGSLDASTSRLRTSIFLPRADDREFAQMTRELSVILRFKRLRXLNLSHSSLKKLPDLIGRLKHLRYLDLSWCVKLASLPKSIGXLVNLQTLKFTGCETLEFSTEVVTKLINLRHLEIHRCKAFEDMNHMMPAGLGKLSSLQSLSRFHVVAADHHQKKKAGKLNELQNLNNLRGNLEISGLDQVRDVMRESQDVNLKXKXLLVSLDLXWGNXDEXGDSLQLLENLRPHECLKGLYVRWYPGERFSDWLSSIDHLSHIYLFGFHNCXXLPPLEXLPHLXSLEIGSMKRLEVISFEASSLGNPAKFFPSLERLQISGCQNLEGWRLPGDSDFCRRLMIIYRQVAHRLSQLIINRCPVLVYLPRFPNVEELQLQLFPYMLYPLAETLEPSVTLPEEDVAPLSKLRSLKIEGKLRGIGYLPSGWKENLTSLEYLEIGDVENLDRWFEKEDSFPSLREIVIYDCDSQALPDKMCDLQSLEHIKILGCHKLASLPDRMTNLTNLKTLEISDCPLLVERCQRETGADWPXISKIQXRILKLNERR

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00767	90980	94246	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000767s00028533.1	PF00931.17	NB-ARC	185	470	2.10E-47
Glyur000767s00028533.1	PF12799.2	LRR_4	590	630	2.20E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.989
SRR1783600	control	1.218
SRR1783602	moderate drought stress	1.224
SRR1811619	moderate drought stress	1.176

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.216
DRR006520	Root Summer glycyrrhizin high producing strain	2.124
DRR006521	Root Winter glycyrrhizin high producing strain	0.686
DRR006522	Root Winter glycyrrhizin high producing strain	0.768
DRR006523	Root Summer glycyrrhizin low producing strain	1.343
DRR006524	Root Summer glycyrrhizin low producing strain	1.214
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.132
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.283

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.980
SRR2868004	Drought Stress (root)	5.017
SRR2967015	Control (root)	3.488

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.027
SRR9715740	Leaf	0.640
SRR9715741	Leaf	2.104
SRR9715739	Root	0.505
SRR9715742	Root	4.349
SRR9715743	Root	4.232

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.076
SRR8749028	MeJA induced 9h	0.021
SRR8749029	MeJA induced 9h	0.028
SRR8749030	Uninduced	0.047
SRR8749031	Uninduced	0.032
SRR8749032	Uninduced	0.009

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.220
SRR8400027	Control - Root	7.234